1W1F


Conserved Protein Domain Family
SH3_Lyn

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cd12004: SH3_Lyn 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Lyn Protein Tyrosine Kinase
Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212937
Aligned: 4 rows
Threshold Bit Score: 115.476
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other Src-family tyrosine kinase SH3 domains bound to peptide/protein ligands
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 1280858
  • Citation:PMID 9351809
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  ##  #               ###            # # ##     
1W1F_A         9 IVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEGFIPSNYVAKLN 64  human
2114076       43 IVIALYPYQGIHEDDLSFKKGEKLKVLEEHGEWWKAKSLSTKKEGFIPSNYVARVN 98  African clawed frog
CAG31917      47 IVVALYPYDGLHEDDLSFKKGEKLKVIEELGEWWKARSLTTKKEGFIPSNYVAKVN 102 chicken
NP_001004543  65 IVVALYPYEAIHADDLGFKKGEKLKIIEEHGEWWKARSLTTRKEGFIPSNYVAEAD 120 zebrafish

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