Conserved Protein Domain Family
Alpha-amylase_C

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pfam02806: Alpha-amylase_C 
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Alpha amylase, C-terminal all-beta domain
Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.
Statistics
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PSSM-Id: 202404
View PSSM: pfam02806
Aligned: 247 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 21-Dec-2011
Updated: 5-Jan-2012
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

pfam02806 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1M7X_C       517 WLVVDDKERSVLIFVRrdkeGNE--IIVASN-FTPV-PRhDY-RFGINQ-PGKWREIL----NTDSMHYHGSnagnggtV 586
gi 75485927  511 E-----KNSRQIAYLRe---DDQdtILVVMN------NDkAGhTLTLPVrHAQWTHLW----NDDVLTAa---------- 562
gi 74500180  554 IIHVLGGSGGLLAYTR----GYMdeVLVIAN--NDAsTPqSY---ELP--PGNWTLIY----ASNNWSE----------V 608
gi 74500184  661 Y----TSKEGVLAFFR----GHDdeVLVIANn--------VPkDTSIPLpPGKWKQIW----PEGEKIF----------- 709
gi 75527547  431 W-----INDDVLIYERs---FNGdyLLVAINkNVNQaYTiSGlLTEMP--AQVYHDVL----DS--LLDGQS-------L 487
gi 75523983  410 W-----INDDVLIYERh---FGEnyALIAINrNLNTsYNiQGlQTEMP--SNSYDDVLdgllDGQSIVVDN--------- 470
gi 74500231  444 W-----INSDVFVYERe---FGDnvVLVAIN-RSLDwYDvSGlQTSLP--EGTYDDALggtlDGFSTTVNT--------- 503
gi 123639703 458 W-----ISDHVLVFERk---FGNhvALVAINrDQTNgYTiTNaKTALP--QNSYKDKLegllGGQELIVGA--------- 518
gi 74552200  396 Y-----VDYNTWIFERk---FGShkILVALNk-----GPdKNiTISLNWtDGTYIDII----EGAILKV----------- 447
gi 74507280  435 W-----------AFERt---FGNhsLLVVMNk-----GPaVNlTFSVDWpDGNYRDAL----YGGEMVV----------- 480
                         90       100       110
                 ....*....|....*....|....*....|...
1M7X_C       587 HsdeIaS-HGRqhsL-SLTLPPLATIWLVReaE 617
gi 75485927  563 --------HGQ---L-TVKLPAYGFAV--LkaS 581
gi 74500180  609 S---V---EHN-----TVTVPPLTALILVRntV 630
gi 74500184  710 --------------EkEITVPGLEVLV--LvkT 726
gi 75527547  488 A---V-KeNGTv---dSFLLGPGEVSV--WqhI 511
gi 75523983  471 --------KGG---VnEFQMSPGEVSV--WefE 490
gi 74500231  504 --------DGS---IdTFSVGPQTVCV--WehT 523
gi 123639703 519 --------DGT---IsSFELGAGQVAV--WtyE 538
gi 74552200  448 --------KEG---QgEIKLPRYSFYV--FhvE 467
gi 74507280  481 --------SGG---KaSVYLPRDSVYV--FhiE 500
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