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Ubiquitin-interacting motif.
Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Statistics
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PSSM-Id: 197845
View PSSM: smart00726
Aligned: 82 rows
Threshold Bit Score: 27.8758
Threshold Setting Gi: 194382884
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Aligned Rows:

smart00726 is a member of the superfamily cl11736.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20
                 ....*....|....*....|
gi 74626608  260 NEDEDIKRAIELSLKEMPQS 279
gi 122055954 224 QDEEDFQRALELSRQETNRE 243
gi 29840791  244 DEEADLRRAIQLSMQGSSRG 263
gi 62900134  206 DEDPDFQAALQLSKEEEELK 225
gi 29840791  224 DDEDDLQRALAMSRQEIDME 243
gi 62900127  258 DSEAELQKAIQLSKEEDEAR 277
gi 75264005  334 GDDQDLAYALQMSMQQAAAA 353
gi 75220049  323 GDDQDLQLALQLSVQDSAKE 342
gi 75220216  323 VDDQDLALALQMSVQDAGGS 342
gi 122055954 242 REDEHLRSTIELSMQGSSGN 261
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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