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pfam00686: CBM_20 
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Starch binding domain
Statistics
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PSSM-Id: 189668
View PSSM: pfam00686
Aligned: 104 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 21-Dec-2011
Updated: 5-Jan-2012
Structure
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Program:
Drawing:
Aligned Rows:
pfam00686 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VEP_A        422 QTIV-VKNV-------PTTIGDTVYITGNRAELGSWDTkQYPIQLYYDs---HSNDWRG--NV-VLPA-ER----NIEFK 482
gi 122120071    1 MINI-RFEAk-----vHTSFGQKVLLVGNHPQLGDWQP-ANGLQLSTYe--gLYPIWRSeqQL-RIPE-GF----DLEFK 65
gi 122057652   97 LTRV-TFKVetp--igYVRENNVLAIIGDSAEIGNWKS-KDAPQMVNSectdTHLIWTI--IL-SFPK-AT----RINYK 164
gi 122243870   65 KVAV-TFEVsvhhlrpANGPPVKVMVVGNTPDLGQWDA-SKGISLITTp--eNFPIFTG--VA-FTDP-NT----ELEYK 132
gi 124454296    4 ECSV-LFHVt-----vRTTLSQVVGVIGNQEELGSWNE-KCLCILKTDp--qIFPKWVAekPI-AFKQ-GT----KLEFK 68
gi 81882827   238 QVSI-QFKVhy----sTSTDVQFIAVTGDHESLGGWNT---YIPLHYCk----dGLWSH--SV-FLPA-DT----VVEWK 297
gi 82275156    78 NVNV-TFRVqy----hTQWPHQTVAVTGDLPELGSWKG---FIPLEKVe----eGQWSA--VV-SLPT-ES----HVEWK 137
gi 122240289   78 QVCL-EHQV---------KFGEHVGIIGSTKELGSW---EEQVELEWT-----TNGWVC--QL-KLPG-ET----LVEFK 131
gi 74854313   139 KVII-HFQVks----tYVPPNHSIYIVGSNTQLGNWRT-DRAVKLSDE----SYPIWKV--DL-EFSKdQL----PFSYK 201
gi 81709040    85 GIPVyRFQLi-----aHTQIGECIGLVGSAPELGRWDV-AKCIRLCTSa--kLYPLWRTdaAIkFRSAsKGiqsqRVEYK 156
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
1VEP_A        483 AFI-----KSKDg---tVkSWQTi-QQSWnpvplkttsHTSS 515
gi 122120071   66 IIVi----NNNQq---lD-HWENl-PQNRtytpslckeSVLL 98
gi 122057652  165 YIIksnsnNSNHqnqnnH-HHHH--HHRNqlinsngstSSIT 203
gi 122243870  133 YVIvkaqpGGQGp---dS-QWEa--NNRQlkvgtngvmHVKN 168
gi 124454296   69 FVI-----LDNGt----A-IWEElpQNRKyrc----ryWKVI 96
gi 81882827   298 FVL-----VENKe---vT-RWEEc-SNRRlqtghedkvVHGW 329
gi 82275156   138 FVL-----LDKGq---vC-RWEEc-RNRLldtglgddmLVHT 169
gi 122240289  132 FVIflvggKDK--------IWEDg-NNRVvelpkdgkfDIVC 164
gi 74854313   202 YII-----ADKIk---sVvHWEYg-NDRWftasathasEYSS 234
gi 81709040   157 YIR-----LGPDg---sA-QWEAigPDRWvpvasgrrsCVTV 189
Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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