Conserved Protein Domain Family
LIM4_LIMPETin

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cd09425: LIM4_LIMPETin 
The fourth LIM domain of protein LIMPETin
The fourth LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the Testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188809
Aligned: 8 rows
Threshold Bit Score: 85.1823
Created: 28-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #  #  #  #                 #  # 
XP_002410816 156 CDGCGEIFRAGTKKMEYKGHQWHDKCFCCCTCKNPIGTrSFIPRDNDIYCTTCY 209 black-legged tick
NP_730212    378 CDGCGEVFRAGTKKMEYKTRQWHENCFCCCVCKTAIGTkSFIPREQEIYCAGCY 431 fruit fly
NP_001025228 435 CDGCNEIFRAGMKKMEYKGKQWHDKCFCCAHCKLAIGTkSFIPKNDDVFCGPCY 488 nematode
XP_002731816 302 CDGCKDIFKSGMKKMEYKGQQWHEHCFVCVNCKEKIGSdSFIPKDGSIYCVPCY 355 Saccoglossus kowalevskii
ACA13258     380 CDGCQGVFKAGMRKYEYRGQQWHEECFLCVECKQPIGAkSFIPRENQVVCVPCY 433 Schistosoma mansoni
CAX73099     109 CDGCKKIFKAGSRKYEYKGSTWHEECFTCIECKQPIGAkSFVPKDDSVVCVPCY 162 Schistosoma japonicum
ADD38896     170 CDGCGDVFRAGMKKMEYKTRQWHEKCFTCCTCNNAIGTkSFIPKEHDIYCAKCY 223 salmon louse
XP_003141116  32 CDGCGEIFRAGMKKMEYKGKQWHDKCFCCALCKTPIGTkSFIPKSDEVYCASCY 85  Loa loa

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