3BRV


Conserved Protein Domain Family
NEMO

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pfam11577: NEMO (this model, PSSM-Id:152013 is obsolete and has been replaced by 431942)
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NF-kappa-B essential modulator NEMO
NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini.The core domain of NEMO is a dimer which binds to two fragments of IKK.
Statistics
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PSSM-Id: 152013
Aligned: 10 rows
Threshold Bit Score: 60.884
Created: 29-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3BRV_B     3 EQGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEK 70  human
Q8VC91    44 EQGTPETLQRCLEENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEK 111 house mouse
Q58EW6    33 ELTNNEAFQRIWAENHDLRGALEQSNKMLRKGHSELLEFQESQRKEREFITYKFGEARNLVLRLTSER 100 African clawed frog
Q4SSU6    55 FFLVLFAFIPFLNSRLLCAESLRQTNLMMKDRFEDLAVWREKQRGERDILERQLEEARVHMEALTHQN 122 spotted green pufferfish
Q0ZDL5    29 LEETLQQMNHLIQENRDLKEALKQTNMSMKERFEGLSVWREKQREEKEFLEGRLDEACGLVEALSSHN 96  Atlantic salmon
Q5M7B7    31 DAEMLEQIKQLLMENNNLKETMKQMNQEMKERLEELLKRHNQHLLDLNSANEVLRKELQSLKEKIATS 98  African clawed frog
Q3ZC32    37 PHELLQQMRELLIENHQLKEAMKLNNQAMKGRFEELSAWTEKQKEERLYFETQSKEAKERLTALSLEN 104 cattle
Q90Z16    37 PEEMVQQMKELITENNELKEAMKLHNQAMKDRYEELSIWREKQKEEREFYETKFKEAKQCLLAKCVEN 104 chicken
CAI11882  26 LEETLQQMNTLIKENRDLKEALKQTNLSMKERFEGLSAWKEKQKEERDFLEQRLEEARTRLNTMDVEN 93  zebrafish
Q58EP1    43 DLAGNEIVQKLITDNHQLREALKRSNDALKERCEEMEGWQRRSREEREFLSCRFREARELVQRLAQEN 110 zebrafish
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