2F1L,1PM3,1RG5,1EYS,1VRN


Conserved Protein Domain Family
PRC

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pfam05239: PRC (this model, PSSM-Id:147440 is obsolete and has been replaced by 398765)
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PRC-barrel domain
The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.
Statistics
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PSSM-Id: 147440
Aligned: 120 rows
Threshold Bit Score: -1
Created: 5-Apr-2011
Updated: 12-Apr-2011
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2F1L_A 110 EGEYywHQLEGLKVIDQGRQLLGVIDHL-LEt-gANDVXVVKPCAGSLD-------DRERLLPYTgq-cvLSIDLAAGEX 179 Pseudomonas aeruginosa
Q9X7S4  87 HQQNlrARLRGARVLTEAGTEIGTVLDVvVEggtGGRVVGFRVAASRRFvpgptrhRRRVYVPRG------RTLTVSGRA 160 Streptomyces coelicolor
Q9RJP4  15 FEAEniRDWRGLDVVDYDGRKIGTLESIyFDt-lTDRPAFATVTIGLPTr------RRLVFVPVD------KATVGPSYL 81  Streptomyces coelicolor
Q9AK83   6 RTDIdpRNLIGRKAFDRDGSRIGTVDEVyLDd-aTGVPEWAAIRTGLFS--------RDAFVPLE------PSELVDGAL 70  Streptomyces coelicolor
Q9RCZ1   2 ITREeiANVLDQPVYDGDGNKIGDAKHVfFDd-mTGRPEWVSVKTGMFG-------STESFVPIR------DAALVQDHL 67  Streptomyces coelicolor
Q97IG5  73 GSFIrfNSIKNMDVINYDGTILGMVEEImFDe-kTFKIKGIIVSRGF----------FANLVSGKkiileGNYMLGKKNL 141 Clostridium acetobuty...
Q9RVX7  85 EALAgkTNLIGMTLLTTDGQTLGKITDVyFDe-rSGQVEGYEASGGLFAdm----tNGRTFIPAP-----QSIQIGKDSA 154 Deinococcus radiodurans
Q9KDE9  84 PLMHgqHKLQGKPLITEEGERLGLVQDVyFLe-kAGKIVAYEVTEGLLAdi----tE--------------GRKVVRSNG 144 Bacillus halodurans
Q8YXT2  83 IEVEalSNLINWEVITETGEVLGRVRGFrFEa-eTGKLNTIVIASLGVPq------IPDQFLSTYeisieEVVSTGPNRL 155 Nostoc sp. PCC 7120
O27219   9 GEEKywSEIKGYQVATNNARILGELEELiINd-kTGKITDVVIKVD-----------SGRNVTVK------GAKKKGDYL 70  Methanothermobacter t...
2F1L_A 180 RVDWDADF 187 Pseudomonas aeruginosa
Q9X7S4 161 LVLPDGAV 168 Streptomyces coelicolor
Q9RJP4  82 KVTYDKSL 89  Streptomyces coelicolor
Q9AK83  71 RVPFDRAL 78  Streptomyces coelicolor
Q9RCZ1  68 EVPYGKDQ 75  Streptomyces coelicolor
Q97IG5 142 FCFSNDKN 149 Clostridium acetobutylicum
Q9RVX7 155 IVPAGVAA 162 Deinococcus radiodurans
Q9KDE9 145 PVTVGKDV 152 Bacillus halodurans
Q8YXT2 156 IVFEGAEE 163 Nostoc sp. PCC 7120
O27219  71 LVPFGKVE 78  Methanothermobacter thermautotrophicus str. Delta H
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