2PX0,2J28


Conserved Protein Domain Family
SRP54_N

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pfam02881: SRP54_N (this model, PSSM-Id:145830 is obsolete and has been replaced by 460734)
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SRP54-type protein, helical bundle domain
Statistics
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PSSM-Id: 145830
Aligned: 190 rows
Threshold Bit Score: -1
Created: 18-Nov-2009
Updated: 5-Jan-2010
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2PX0_E        17 TYPPQIPAQQELGD-----FSaYQSVL--PEPLRKAEKLLQETGIKESTKTNTLKKLL-RfSV----EAGGLTEENVVGK 84  Bacillus subtilis
Q7VRI6        11 LKTSLLNTRKKIGDsifdiF---HNRIvdHDTINIIKNQLIKSDVNIQTTQKIINNFK-K-NTf---LNMNLNSKSIYEI 82  Candidatus Bloc...
O28217        43 KVGLKDKVAALVISre--vVI-DEKKV--EGILEELEEILLESDVAFEVVDAISEALK-SrLVgrrkKLTEKLSDIVMEE 116 Archaeoglobus f...
A0B9G0        84 KISLVDKAKSLILEre--vII-DERDL--EEPLWGLEMALLESDVALPVAEEIVSSVK-SsLVgskkKIGSDTGDLVESA 157 Methanosaeta th...
Q97BC4         5 FKKKLVEIFS-------------RKKIdpDEAAEEIPLKLIEADVSVETAEYLGNLVR-NkL------KDRDFSGELNDV 64  Thermoplasma vo...
O67266        79 LKKIVNELINNGEVkgekiVEkGSDTY--APRVKRYLEKLVIKNISKNIAEKIIQDAC-GyDId---NKIYDFKDEPYTS 152 Aquifex aeolicus
YP_001056712   5 LKRTFSKFVNAVVSavtedTL-GEKEV--EEFVTDLYLELVESDVAVEVADALVEELKrR-LVglkvPRFGDKEGAVKRA 80  Pyrobaculum cal...
YP_001540695   5 LKSAFSSLVKAIGDavtqrEL-TEDDV--NKLLGEFEERLIEYDVALDTAEALISELK-AkLIgvkvPRFSDND-YVKAL 79  Caldivirga maqu...
YP_001581730   5 LRSAFSNAAKSFGEk----EL-NEKDI--EDILFELEISLLESDVATEVIDSIKDDLK-EkLVgs-----kvDKKEIEKF 71  Nitrosopumilus ...
YP_002565490  76 DPSTFQRAKAFATGr---iII-EEEDL--EEPLWDLEMALLESDVEMSVAERILDTVR-EkMLgesrKQVETTGELVESA 148 Halorubrum lacu...
2PX0_E        85 LQEIL 89  Bacillus subtilis
Q7VRI6        83 IHHSM 87  Candidatus Blochmannia floridanus
O28217       117 LRSII 121 Archaeoglobus fulgidus
A0B9G0       158 LRAAL 162 Methanosaeta thermophila PT
Q97BC4        65 LYASI 69  Thermoplasma volcanium
O67266       153 LRESI 157 Aquifex aeolicus
YP_001056712  81 VVDSV 85  Pyrobaculum calidifontis JCM 11548
YP_001540695  80 VRDTL 84  Caldivirga maquilingensis IC-167
YP_001581730  72 VKDSL 76  Nitrosopumilus maritimus SCM1
YP_002565490 149 LHDAL 153 Halorubrum lacusprofundi ATCC 49239
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