Conserved Protein Domain Family
CTF_NFI

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pfam00859: CTF_NFI (this model, PSSM-Id:144451 is obsolete and has been replaced by 459967)
CTF/NF-I family transcription modulation region
Statistics
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PSSM-Id: 144451
Aligned: 4 rows
Threshold Bit Score: 315.865
Created: 28-Mar-2013
Updated: 4-Apr-2013
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q3UTK6       237 QDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYY-SMSPGA--MRRSLPSTSSTSStKRLK--SVEDEMD-S 310 house mouse
Q6FI30       208 QESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAY-DLNPAStgLRRTLPSTSSSGS-KRHKsgSMEEDVDtS 285 human
Q4SRP6       319 EDSFIKSGVFSVAELVRVARMPITLRAAVNFSMADMSSQPYYhDLNSGVg-LHRSLSSPPGS---KRPKtvSMDENMDtS 394 spotted green p...
NP_001073431 213 QDSFVTSGVFTVSELVRVSQTPIAAGTGPNFSLADLDSSSYY-SMSPGA--MRRPLPSTSSSSSaKRIK--CMEDEVD-S 286 zebrafish
Q3UTK6       311 PGEEpFYTgqgrSPGSGSQSS-GWHE-VEPGLPSPsTLKKSEKSGFSSPSPSQtSSLGTAFTQHHRPVI-----TGPRAS 383 house mouse
Q6FI30       286 PGGD-YYT----SPSSPTSSSrNWTEdMEGGISSPvKKTEMDKSPFNSPSPQD-SPRLSSFTQHHRPVIav--hSGIAQS 357 human
Q4SRP6       395 PTGPdFYS----SPSSPASSRaNWHE-RDGDMSSP-TMKKPDKPLFSPTSPQDsSPRLSAFPQPHHPGLtgvghSVISTR 468 spotted green p...
NP_001073431 287 PGEEsYYPgqgrSPGSGSQAS-SWHE-VEPA------------------GYKLrGSLASSFISRQ-------------AS 333 zebrafish
Q3UTK6       384 PHATpSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQvgflnPNGSSQ--GKVHNPFLP 456 house mouse
Q6FI30       358 PHPS-SALHFPTTSILpQTASTYFPHTAIRYpphlNPQDPLKDLVSLACDPASQQPGP-----LNGSGQ--LKMPSHCLS 429 human
Q4SRP6       469 SPPPhSPLQFSASAILpPAPSSYFPHTTIRYpphlSPADPLKSYVP-SYDPSSPQSSQ-----PNSSGQvvGKVPGHF-- 540 spotted green p...
NP_001073431 334 PHATpSSLHFPTSPII-QQPGSYFSHHAIRY----HPQETLKEFVQLVCPDSGQQAGQvgflnPNGSSQ--GKVHNPFLP 406 zebrafish
Q3UTK6       457 TPMLPPPPP--PPMARPvplpmPDTKPPTTStEGGAASPTSPTYATPSTSPANR-FVSVGPRDPSFVnipQQTQSWYLG 532 house mouse
Q6FI30       430 AQMLAPPPPglPRLALP-----PATKPATTS-EGGATSPTSPSYSPPDTSPANRsFVGLGPRDPAGI---YQAQSWYLG 499 human
Q4SRP6       541 TPVLAPSPH--HGAVRPvslsmPDTKPITTStEG---------YSAPGTPTANR-FVGLSPRDPAFL---HQQQSWYLG 604 spotted green pu...
NP_001073431 407 TPMLPPPPP--PPMARPvplpvPDSKPPSTStDGGGNSPTSPTYSTPSTSPAQR-FVSVGPRDPSFVnipQQPQ-WYLG 481 zebrafish
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