2V9Q,2VRA


Conserved Protein Domain Family
Ig2_Robo

?
cd05724: Ig2_Robo (this model, PSSM-Id:143201 is obsolete and has been replaced by 409389)
Click on image for an interactive view with Cn3D
Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site.
Statistics
?
PSSM-Id: 143201
Aligned: 8 rows
Threshold Bit Score: 150.238
Created: 19-Jul-2007
Updated: 18-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2V9Q_A        116 QNPSDVMVAVGePAVMECQPPRGhPEPTISWKKDGSPLddk-------deRITIRg--GKLMItytrksDAGKYVCVGTN 186  human
2VRA_A        113 VEPKDTRVAKGeTALLECGPPKGiPEPTLIWIKDGVPLddlkamsfgassRVRIVd-gGNLLIsnvepiDEGNYKCIAQN 191  fruit fly
NP_001024990  137 VRPRTVQALGGeMAVLECSPPRGfPEPVVSWRKDDKELriq-------dmPRYTLhsdGNLIIdpvdrsDSGTYQCVANN 209  nematode
XP_785004     248 QEPSDTMALLGeAVVLECSPPRGhPEPEVSWERNGQTVved-------giRVRILt-dGNLVIsqpkssDIGNYVCVATN 319  purple urchin
NP_061928     141 IQPRDMVAVVGeQFTLECGPPWGhPEPTVSWWKDGKPLal--------qpGRHTVs-gGSLLMaraeksDEGTYMCVATN 211  human
AAV36901       70 LEPANTRVAQGeVALMECGAPRGsPEPQISWRKNGQTLnlv------gnkRIRIVd-gGNLAIqearqsDDGRYQCVVKN 142  fruit fly
CAM60093      177 VQPSDVEVAIGeMATINCSPPVGhPEPNVTWRKDGILInss-------neHYTELk--GKLIIapaqknDSGVYSCIASN 247  zebrafish
XP_001194423  124 EEPVSDQLISGdSAVLECTPPRGyPTPEVTWLKDDQPIild-------nnRVKIVe-dGNLLLkelrkdDEGTYKCKAQN 195  purple urchin
2V9Q_A        187 MVGERESEVAELTV 200  human
2VRA_A        192 LVGTRESSYAKLIV 205  fruit fly
NP_001024990  210 MVGERVSNPARLSV 223  nematode
XP_785004     320 SEGAKRSAAGRLII 333  purple urchin
NP_061928     212 SAGHRESRAARVSI 225  human
AAV36901      143 VVGTRESATAFLKV 156  fruit fly
CAM60093      248 MIGVRESRAARLSV 261  zebrafish
XP_001194423  196 VAGERISKDAYLTV 209  purple urchin
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap