Conserved Protein Domain Family
DEXDc

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smart00487: DEXDc 
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DEAD-like helicases superfamily
Statistics
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PSSM-Id: 128763
View PSSM: smart00487
Aligned: 711 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 13-Apr-2009
Updated: 29-Apr-2009
Structure
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Program:
Drawing:
Aligned Rows:
smart00487 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1WRB_A         38 ILLASYQRPTPIQKNAIPAILEH------RDIMACAQTGSGKTAAFLIPIINHLvcqdlnqqrySKTA--------YPKC 103
gi 11387191   162 YDDGSGKSPRYYQLQAINKTIEAvsn-gqNRVLLVMATGTGKTYTAFQIIWRLW----------KSKN--------KKRI 222
gi 81859470   166 IPLCDKKRPRPHQTEAIEKTKEYfsdpknARGKLIMACGTGKTYTSLKIMESLD----------PK------------IT 223
gi 82051416   158 DETRTAIEDRLYQKEAANMGYQElr--rsGRAILQMACRCGKTRVAYLILSNYL----------QG------------KV 213
gi 75538980    16 RRRKALWQPRADQTRLAARVAEIlr--tsSHAYLEAPTGSGKTLTMALIGELRA----------EE------------TK 71
gi 89111059   455 NPGMSELGLRYYQEDAVRAVEKAivk-gqQEILLAMATGTGKTRTAIAMMFRLI----------QSQR--------FKRI 515
gi 162417900   89 VNPFPYNPDYAYQDQTVETLVRE------GMMIAQIATGGGKSNVACKAAARIG----------RM-------------T 139
gi 215427390  160 LTPAKRHELRPHQQQAIDAVFRGfav-gnDRGKLIMACGTGKTFTALKIAERIA----------ADNGg-------SARI 221
gi 5019620     36 AIHDNIYTPRKYQVELLEAALD-------HNTIVCLNTGSGKTFIASTTLLKSC----------LYLDlgetsarnGKRT 98
gi 17552834     5 RADLQCFNPRDYQVELLDKATK-------KNTIVQLGTGSGKTFIAVLLLKEYG----------VQLFapl--dqgGKRA 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1WRB_A        104 LILAPTRELAIQILSESQKFSLNT------P----------------------LRSCVVYGGADT-----HSQIREVQMG 150
gi 11387191   223 LFLADRNILVDQTKNNDFQPF--------------------------------GTAMTKVSGRTI--------------D 256
gi 81859470   224 LFLAPSIALLSQTFREYAQEKSEpfyasivcsddktgqsknednddikfselpIKPSTRLEDILS-----TYEKAQKENK 298
gi 82051416   214 LYLVPGLSLLRQTLEKLYQYGIS------------------------------LKNVLLVGSDQ----------TRIVLN 253
gi 75538980    72 VYLAHSVDIVDQTSRQFDAFA----------------------------------AAGVISNRA---------------- 101
gi 89111059   516 LFLVDRRSLGEQALGAFEDTRING------Dt---------------------FNSIFDIKGLT----------DKFPED 558
gi 162417900  140 LFLTTRSVLMFQMAENFQKSIDYR------Aenge--------------pwlkGQKVGVIGSGEF-----------QVSR 188
gi 215427390  222 LLLVPSISLLSQTLREWTAQS-EL------DvrafavcsdtkvsrsaedyhvhDVPIPVTTDARVll--hEMAHRRRAQG 292
gi 5019620     99 VFLVN---SANQVAQQVSAVRTHS------D-----------------------LKVGEYSNLEVnaswtKERWNQEFTK 146
gi 17552834    66 FFVVEKVNLVEQQAIHIEVHT--------------------------------SFKVGQVHGQTSsglwdSKEQCDQFMK 113
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1WRB_A        151 C--HLLVATPG-------------RLVDFIEKNK-------------------ISLEFCKYIVLDEADRMLDM---GFEP 193
gi 11387191   257 PayEIHLALYQ-------------AITGPEEDQKaf---------------kqVAPDFFDLIVIDECHRGSA----SEDS 304
gi 81859470   299 R--FIIFSTYQ-------------SALRIKEAQE-------------------AGLNGIDLIICDEAHRTVGAmysTNER 344
gi 82051416   254 H--DNIEMTTNpvfiakrireapsLLVIATYQSSt------------------LLVDDFDLIISDECHRICGEw--ETRP 311
gi 75538980   102 ---SWRCTTWQ-------------SYREAVRRGRlq---------------elVGTASPDLVFVDECHIGG-----GDGP 145
gi 89111059   559 St-KIHVATVQ-------------SLVKRTLQSDe-----------------pMPVARYDCIVVDEAHRGYI----LDKE 603
gi 162417900  189 ---HINVATVQ-------------TLASFLEEPPrdaspekkryhlkrrelvkRFLSSVSLLILEEAHESSGS---NFYD 249
gi 215427390  293 L--TVVFCTYQ-------------SLPTVAKAQR-------------------LGVDEFDLVMCDEAHRTTGVt--LAGD 336
gi 5019620    147 H--QVLIMTCY-------------VALNVLKNGY-------------------LSLSDINLLVFDECHLAILD---HPYR 189
gi 17552834   114 Rh-HVVVITAQ-------------CLLDLIRHAY-------------------LKIEDMCVLIFDECHHALGSq-hPYRS 159
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1WRB_A        194 QIRKIIEES--------------NMpsgiNRQTLMFSATFP---KEIQKLAADFLY------NYIFMTVGRv---gSTSD 247
gi 11387191   305 AWREILDYF---------------S----SATQIGLTATPK---ETHEVSSTDYFG------DPVYVYSLKegiedGFLA 356
gi 81859470   345 DDKNAFTLChsd---------enIK----ATKRLYMTATPK---VYSESSKAKAKE------KDNVIYSMD-----DAQT 397
gi 82051416   312 FTHVLLNF----------------K----KGHRLFLTATP-------RYDTPLSMKnrelfgGVAFRYYL--------RE 356
gi 75538980   146 DSNVSFQAIr-------------AT----ARKVVWVSATPWd-vNEAVLGVREGCS------AVLRMQEAF------NLE 195
gi 89111059   604 QTEGELQFRsqldyvsayrrildHF----DAVKIALTATP------ALHTVQIFGE------PVYRYTYRTa---vIDGF 664
gi 162417900  250 IARLCIN----------------------ADYRLALTATP-----FMKDSTEANMRlm---aVAGRIEIKV-------TE 292
gi 215427390  337 DESNFVRVHdg----------qyLK----AARRLYMTATPR---IFTESIKDRADQhs---aELVSMDDE--------LT 388
gi 5019620    190 EFMKLCEIC--------------PS----CPRILGLTASILngkWDPEDLEEKFQKl----eKILKSNAETat-dlVVLD 246
gi 17552834   160 IMVDYKLLKk------------dKP----VPRVLGLTASLIkakVAPEKLMEQLKKl-----ESAMDSVIE-----TASD 213

                  ....*
1WRB_A        248 SIKQE 252
gi 11387191   357 PYKVV 361
gi 81859470   398 FGEEI 402
gi 82051416   357 GIEAG 361
gi 75538980   196 LLNAT 200
gi 89111059   665 LIDQD 669
gi 162417900  293 KYLID 297
gi 215427390  389 FGPEF 393
gi 5019620    247 RYTSQ 251
gi 17552834   214 LVSLS 218
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