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Entrez CDD Structure Protein Help
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pfam00447: HSF_DNA-bind, with user query added  
HSF-type DNA-binding
Statistics
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PSSM-Id: 109502
View PSSM: pfam00447
Aligned: 11 rows
Created: 29-Sep-2008
Updated: 30-Oct-2008
Structure
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Aligned Rows:
pfam00447 is classified as a model that may span more than one domain.
pfam00447 is not assigned to any domain superfamily.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:

gi 730744    83 .[17].YPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFH.[9].QRCKYG.[3].WEFQH 171
query         1       MDLPVGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQ.[8].PKYFKH.[3].ASFVR 71
gi 585278    17 .[15].SDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFR.[8].MITAEK.[3].IEFQH 102
gi 585277    22 .[15].SNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFR.[8].IVKLER.[3].VEFQH 107
gi 585276    21 .[15].TDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFR.[9].LVKPEK.[2].TEFQH 106
gi 729774    30 .[15].TDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFR     KVDPDR     WEFAN 104
gi 729775    40 .[15].TDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFR     KVDPDR     WEFAN 114
gi 12644262  51 .[15].TDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFR     KVDPDR     WEFAN 125
gi 123686   195 .[15].NEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWH.[8].SMLSNN.[3].WEFEN 280
gi 1708318   51 .[15].TDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFH.[9].LQSDSP.[3].LEFAN 137
gi 123685    47 .[15].TNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFH.[8].GLRFDR.[2].IEFSH 131

gi 730744   172 .[1].EFRVHYGKG     LDNIKRKIPAQ.[5].DESQK.[13].NPSGSLLNESTTELLLSNTVSKDAFGNLRRRVD 248
query        72      QLNMYGFRK.[1].VHIEQGGLVKP.[5].EFQHP.[11].NIKRKVTSVSTLKNEDIKIRQDSVTKLLTDVQL 146
gi 585278   103 .[1].FFKQGNAHL     LENIKRKVSAV.[4].LKVCA.[13].REQQNNMDIRLANMKRENKALWKEVAVLRQKHS 178
gi 585277   108 .[1].YFKQGREDL     LEHIKRKVSSS.[4].NKISQ.[13].EIKQETIESRLSALKRENESLWREVAELRAKHL 183
gi 585276   107 .[1].YFIRGQEHL     LENIKRKVTSV.[7].IKVRQ.[13].KGKQESMDSKLIAMKHENEALWREVASLRQKHA 185
gi 729774   105 .[1].GFLGGQKHL     LKTIKRRRNVG     QSMNQ      QGSGACIEIGYYGMEEELERLKRDKNVLMTEIV 163
gi 729775   115 .[1].GFLRGQKHL     LKSISRRKPAH.[5].QQQPH.[13].ASVGACVEVGKFGLEEEVERLKRDKNVLMQELV 191
gi 12644262 126 .[1].GFLRGQKHL     LKKISRRKSVQ.[5].SSNPQ.[11].AALSSCVEVGKFGLEEEVEQLKRDKNVLMQELV 200
gi 123686   281 .[1].NFKRGKEYL     LENIVRQKSNT.[5].TTNAE.[13].KYNQLAIAEDLKRITKDNEMLWKENMMARERHQ 357
gi 1708318  138 .[1].NFQRDQPEL     LCLVTRKKAGS.[4].ESNTS.[13].RIQQMNLSNELSRIQVDNAALWQENMENRERQR 213
gi 123685   132 .[1].FFKRNSPFL     LDQIKRKISNN.[6].GVLKP.[13].RGRQDNLDSRFSAMKQENEVLWREIASLRQKHA 209

gi 730744   249 .[2].QKELDMSKMESYATK     VELQK.[3].KYNTVIESL     I 283
query       147 .[2].GKQESMDSKLLAMKH.[1].NEALW     REVASLRQK     H 179
gi 585278   179 .[1].QQKLLSKILQFILSL     MRGNY     IVGVKRKRS     L 209
gi 585277   184 .[1].QQQVIRKIVQFIVTL     VQNNQ     LVSLKRKRP     L 214
gi 585276   186 .[1].QQKVVNKLIQFLISL     VQSNR     ILGVKRKIP     L 216
gi 729774   164 .[4].QQQSTRNQIIAMGEK     IETQE     RKQVQMMSF     L 197
gi 729775   192 .[4].QQQSTDNQLQGMVQR     LQGME     LRQQQMMSF     L 225
gi 12644262 201 .[4].QQQTTDNKLQVLVKH     LQVME     QRQQQIMSF     L 234
gi 123686   358 .[1].QQQVLEKLLRFLSSV     FGPNS.[3].IGNGFQPDL.[3].L 394
gi 1708318  214 .[1].HQETIDKILRFLASV     YLDGK.[3].PSKVMPKSR.[1].L 248
gi 123685   210 .[1].QQQIVNKLIQFLITI     VQPSR.[1].MSGVKRHVQ     L 241
Citing CDD
Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res. 37(D)205-10.
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