6MZD


Conserved Protein Domain Family
TAFII28

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pfam04719: TAFII28, with user query added  
hTAFII28-like protein conserved region
The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C-terminal of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3.
Statistics
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PSSM-Id: 428086
Aligned: 79 rows
Threshold Bit Score: 92.9331
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

query        108 ILVSSFSEEQLNRYEMYRRSAFPKAAIKR 136
XP_004988780 216 ILMASFTEEQRIRHESYRRSRFDPKVLRK 244
CAP35839     205 LLIANLTREQLDRYEAFRKSKFRRQPIKN 233
EGT34876     228 LLIGNFSNEQLDRYIAFRRSKFTRQVIKN 256
EFP03427     191 ILLGNMSTQQLEQYTAYRRSRFQKSTIRK 219
4_pfamImport   1 ALLASFSEEQLTRYEVYRRSAFPRAAIGC 29 
ELK16819      96 LLVSSLSEEQLNRYEMYGRSAFRREAVKR 124
XP_015783679  31 VLVSNFSEEQLNRYEMFRRASFPKASVKR 59 
XP_002906111   3 RLMESLPEAEARRHEQFRRSHFERGAIKR 31 
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