Conserved Protein Domain Family
RETR1_RHD

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cd22560: RETR1_RHD 
N-terminal reticulon-homology domain of Reticulophagy regulator 1
Reticulophagy regulator 1 (RETR1 or RETREG1), also called reticulophagy receptor 1 or FAM134B (family with sequence similarity 134, member B), is an endoplasmic reticulum (ER)-anchored autophagy receptor that regulates the size and shape of the ER. It regulates turnover of the ER by selective phagocytosis, mediating ER delivery into lysosomes through sequestration into autophagosomes. It promotes membrane remodeling and ER scission through its membrane bending activity, and targets the fragments into autophagosomes by interacting with ATG8 family modifier proteins such as MAP1LC3A, MAP1LC3B, GABARAP, GABARAPL1 and GABARAPL2. Loss of function of FAM134B is associated with diseases and cancer, including hereditary sensory and autonomic neuropathy type IIB (HSAN IIB), colorectal adenocarcinoma, and oesophageal squamous cell carcinoma, and other progressive neuronal degenerative diseases. FAM134B is also implicated in the suppression of viral replication during Ebola, Dengue, Zika, and West Nile viral infections. RETREG1/FAM134B contains an N-terminal reticulon-homology domain (RHD) that shows sequence similarity to ADP-ribosylation factor-like 6 binding factor 1 (Arl6IP1 or Arl6ip-1), an ER protein that has an important role in cell conduction and material transport. The RHD may function in inducing membrane curvature.
Statistics
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PSSM-Id: 411699
Aligned: 14 rows
Threshold Bit Score: 322.86
Created: 21-Sep-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Q9H6L5        67 AVTWLLGEPVLWLG.[ 2].ADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDMVLSRTR 142 human
XP_005993553  11 EQRQQQLEAPWWSG.[12].LAAGLTWRRPLHSIALFVCTNWLFWFITLTSWRLYHLISLALLVAVVAQMIRDLVLCRIR 96  coelacanth
NP_001030022  67 AVTWLLGEPVLWLG.[ 2].ADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDMVLSRTR 142 human
Q5E9K8        63 VVTWLLGEPALWLG.[ 2].ADELLSWKRPLHSLLAFVGANLVFWFLALTPWRVYHLISVMILTRVIMQIIKDMILSRTR 138 cattle
Q8VE91        50 ALTWLLGEPVLWLG.[ 2].ADELLSWKRPLRSLLTFLGANLLFWFLALTPWRVYHLISVMILGRVIMQIIKEMVLSRTR 125 house mouse
NP_001030023  50 ALTWLLGEPVLWLG.[ 2].ADELLSWKRPLRSLLTFLGANLLFWFLALTPWRVYHLISVMILGRVIMQIIKEMVLSRTR 125 house mouse
XP_003640826  42 AAAALLGETGLAVG.[ 2].IAAALSWERPLHSLGGFVCANLLFWFVALTPWRVYHLTSLIILGLLVLQIIKDLVLSRIK 117 chicken
XP_007899905  57 PGPPAAGEWVPGCG.[11].LESALTWRSPGYSVGLFICANAVFWFLALTPWRLYSLVALCFLLLAVLEKVKLLTLFIMK 141 elephant shark
XP_018124903   6 EGSHKVSEEEEQLP.[12].FRNILTWHRPVRSLVAFLCANCLFWFLALTPWRMYHLISLILLGVVMLQILHHVILSRSK 91  African clawed frog
XP_018123183  55 AELQTMSEAEEGSH.[ 7].FLNILTWHRPVRSLVTFLCANCLFWFLALTPWRMYHLISLILLGVVMFQILQHFLLSRSR 135 African clawed frog

Q9H6L5       143 GAQLWRSLSESWEVINS.[5].PRLSHCIAESWMNFSIFLQEMSLFKQQSP.[1].KFCLLVCSVCTFFTILGSYIPGVI 218 human
XP_005993553  97 GAQLWRSLSASWEVVDV.[5].TGLSQCIAESWMNCSKFLQEMSHFKQQNP.[1].KFCLLVCSLCTFSAVIGRYIPGAV 172 coelacanth
NP_001030022 143 GAQLWRSLSESWEVINS.[5].PRLSHCIAESWMNFSIFLQEMSLFKQQSP.[1].KFCLLVCSVCTFFTILGSYIPGVI 218 human
Q5E9K8       139 GAQLWRSLSESWEVINS.[5].PGFSHCLAESWMNFSIFLQEMSVFKQQSP.[1].KFCLLVCSVCTFFTILGSYIPGVI 214 cattle
Q8VE91       126 GAQLWRSLTESWEVINS.[5].ARLSQCIAESWMNFSMFLQEMSLFKQQSP.[1].KFCLLVCSVCTFFTILGSYIPGVI 201 house mouse
NP_001030023 126 GAQLWRSLTESWEVINS.[5].ARLSQCIAESWMNFSMFLQEMSLFKQQSP.[1].KFCLLVCSVCTFFTILGSYIPGVI 201 house mouse
XP_003640826 118 GAQLWRSITDNWEVISS.[5].PRINQCLSEALMNLFVFLQEMSHFKEQNP.[1].KFCLLVCSVCTFFTVLGSYIPGVV 193 chicken
XP_007899905 142 GWKSSRSLSESWKVTDD.[5].PRLNQYMTESWMSCTAFFEEMFHFKKQNP.[1].KFCLLVCSLCTFCAVVGRYIPGAV 217 elephant shark
XP_018124903  92 GIHLWRKMSIRWEMMTS.[4].PRLGQCISESWSSYSAFLQELLHFKQQNP.[1].KFCLLVCSVCFFFTIMGSYIPGVV 166 African clawed frog
XP_018123183 136 GAHLWRKISLRWEIMTS     SECKPRLGQCILESWSSYSELLHFKQRNP.[1].KFCLLVCSVCSFFTIMGSYIPEVV 206 African clawed frog

Q9H6L5       219 LSYLLLLCAFLCPLFKCNDIGQK.[4].IKSVLLKLDFGIGE 259 human
XP_005993553 173 LSYFILLCAFLCPLIKCNKLGQK.[4].LKPALQKLDFGIVD 213 coelacanth
NP_001030022 219 LSYLLLLCAFLCPLFKCNDIGQK.[4].IKSVLLKLDFGIGE 259 human
Q5E9K8       215 LSYLLLLCAFLCPLFKCNDIGQK.[4].IKSCLLKLDFGIRE 255 cattle
Q8VE91       202 LSYLLLLFAFLCPLFKCNDIGQK.[4].VKSILLKLDFGIGE 242 house mouse
NP_001030023 202 LSYLLLLFAFLCPLFKCNDIGQK.[4].VKSILLKLDFGIGE 242 house mouse
XP_003640826 194 LSYVLLLCAFLCPFLKCNEFGQK.[4].VKSVLMKLDFGIVE 234 chicken
XP_007899905 218 VSYCLLLCALLWPLVTSYDLGHR.[4].IEPLLQRLDFGLKD 258 elephant shark
XP_018124903 167 LSYLLLLFAFLCPFLKCNEFGKR.[4].VKTVLQKLNLGFRA 207 African clawed frog
XP_018123183 207 LSYLLLLFAFLCPFLKCNEFGQI.[4].VKTVLQKLNFGFQA 247 African clawed frog
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