Conserved Protein Domain Family
CH_SPTB_rpt2

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cd21319: CH_SPTB_rpt2 
second calponin homology (CH) domain found in spectrin beta chain, erythrocytic (SPTB) and similar proteins
Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. SPTB, also called beta-I spectrin, may be involved in anaemia pathogenesis. SPTB contains two copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409168
Aligned: 6 rows
Threshold Bit Score: 260.323
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens SPTBN2 binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1              #   #                                                 # ##  #      #    ###
P11277        170 RETRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPDLIDFDKLKDSNARHNLEHAFNVAERQLGIIP 249  human
PKK16644       73 RETRSARDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHRHRPELVDFQNLTKSNARHNLEHAFSVAERHLGITP 152  rock pigeon
XP_014341326  148 RETRSAKDALLLWCQMKTAGYPNVNITNFTSSWKDGLAFNALIHKHRPDLVDFGKLKKSNPTHNLNHAFGVAERQLGVTK 227  coelacanth
PIO35783      211 SETRSAKDALLLWCQMKTAGYPNVNVTNFTSCWKDGLAFNALIHKHRPDLINFEKLKKSNAKHNLENAFTVADRQLGITQ 290  American bullfrog
XP_007886307  151 RETRSAKDALLLWCQMKTAGYPNVNITNFTSSWKDGMAFNALIHKHRPDVIDFKKLKKSNPIHNLQQAFNVAEQKLGVTK 230  elephant shark
AAI62568      178 QETRSAKDALLLWCQMKTAGYPNINITNFTTSWKDGMAFNALIHKHRPDLVDYGNLKRSNPTHNLQQAFNVAEKKLGVTK 257  zebrafish

Feature 1         ######        ## ##  ##  #      
P11277        250 LLDPEDVFTENPDEKSIITYVVAFYHYFSKMK 281  human
PKK16644      153 LLDPEDVFTENPDEKSIITYVVAFYHYFSKMK 184  rock pigeon
XP_014341326  228 LLDPEDVFTENPDEKSIITYVVAFYHYFSKMK 259  coelacanth
PIO35783      291 LLDPEDVFTENPDEKSIITYVVAFYHYFSKMK 322  American bullfrog
XP_007886307  231 LLDPEDVYTENPDEKSIITYVVAFYHYFSKMK 262  elephant shark
AAI62568      258 LLDPEDVFTENPDEKSIITYVVAFYHYFSKMK 289  zebrafish

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