6ANU


Conserved Protein Domain Family
CH_beta_spectrin_rpt1

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cd21193: CH_beta_spectrin_rpt1 
first calponin homology (CH) domain found in the beta spectrin family
The beta spectrin family includes beta-I, -II, -III, -IV and -V spectrins. Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. Beta-I spectrin, also called spectrin beta chain, erythrocytic (SPTB), may be involved in anaemia pathogenesis. Beta-II spectrin, also called spectrin beta chain, non-erythrocytic 1 (SPTBN1), or fodrin beta chain, is a component of fodrin, which is the general spectrin-like protein that seems to be involved in secretion. Fodrin interacts with calmodulin in a calcium-dependent manner and is thus a candidate for the calcium-dependent movement of the cytoskeleton at the membrane. Beta-IV spectrin is also called spectrin, non-erythroid beta chain 3 (SPTBN3) or spectrin beta chain, non-erythrocytic 4 (SPTBN4). Its mutation associates with congenital myopathy, neuropathy, and central deafness. Beta-III spectrin is also called spectrin beta chain, non-erythrocytic 2 (SPTBN2), or spinocerebellar ataxia 5 protein (SCA5). Beta-V spectrin, also called spectrin beta chain, non-erythrocytic 5 (SPTBN5), is a mammalian ortholog of Drosophila beta H spectrin. Beta-III and Beta-V spectrins may play crucial roles as longer actin-membrane cross-linkers or fulfill the need for greater extensible flexibility than can be provided by the other smaller conventional spectrins. Members of this family contain two copies of the CH domain. This model corresponds to the first CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409042
Aligned: 15 rows
Threshold Bit Score: 206.378
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
actin binding
Conserved site includes 30 residues -Click on image for an interactive view with Cn3D
Feature 1:actin binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1          #  ##  ##  ##  #                                                       #  ##  #
6ANU_f         43 FERSRIKALADEREAVQKKTFTKWVNSHLAR.[4].VGDLYSDLRDGRNLLRLLEVLSGEILPKP.[4].MRIHCLENVD 120  human
CDS25643       19 YEQNTISRLQAEVSRVQKKTYTNWINIYLRP.[4].VTDLYNDLSDGKRLMQLLEVISNANLGKP.[4].LRVQKIENVG 96   Hymenolepis micros...
XP_001743442    4 STERLVQELSAEREAMQKRTFTRWANAFLRD.[4].IEDLYTDLSDGVLLLKLLEAISGTELPKP.[4].LRIYKLENCN 81   Monosiga brevicoll...
GBL80063        5 QPEAVVENLRQERLNVQKKTFTKWANVHLQK.[4].IDDLFVDLGDGVKLMRLLESLTGEKLGKP.[4].ARINKIENVS 82   Araneus ventricosus
RUS83162        9 FEKGRIKALQDERVYIQKKTFTKWANAFLEK.[4].IRDLFSDLADGKMLMKLLEIISGENLGRP.[4].LRVQKVENVN 86   eastern emerald el...
EFX84686       10 FEQGRIKVLQEERLHIQKKTFTKWMNSFLTK.[4].VEDLFVDLADGKKLLKLLEIISGEKLAKP.[4].MRVHKIENVN 87   common water flea
XP_030854994   13 FEKGRIHALQEERIAIQKKTFTKWINSHLAK.[4].IQNLFEDLHDGKALMRLLEVISGESVGRP.[4].LRVQKMENIN 90   purple sea urchin
XP_002732400    9 FEINRIKALREERMSIQKKTFTKWMNQFLEK.[4].VSNLYTDLEDGKLLMKLLEIISGEPLGRP.[4].LRVQKIENLN 86   Saccoglossus kowal...
NP_741632     140 FERSRIRTLQDERVHIQKKTFTKWCNSFLNR.[4].IVDLFEDVGDGIMLMKLLEIISGDKLGKP.[4].MRVQKVENLN 217  Caenorhabditis ele...
XP_013406633    8 FEKGRIRALQEERILVQKKTFTNWINSFLMK.[4].ISEIFEDLSDGKLLLKLLEIISGETIGRA.[4].LRVQKVENLN 85   Lingula anatina

Feature 1               #        #########      ## ##  ##  ##
6ANU_f        121 KALQFLKEQ.[1].VHLENMGSHDIVDGNHRLTLGLVWTIILR 159  human
CDS25643       97 RALNFIKSK     VHLENIGAEDIVDGNPTLILGLIWTIILR 134  Hymenolepis microstoma
XP_001743442   82 KALSFLKAK.[1].VKLENISAENIVDGGSTLILGLMWTLILR 120  Monosiga brevicollis MX1
GBL80063       83 RCLAFLHSK.[1].MRLENISSEDIVDGKPHLILGLLWTIILR 121  Araneus ventricosus
RUS83162       87 RCLKFLATK     VYFENIGAEDIVDGNPRLILGLIWTIILR 124  eastern emerald elysia
EFX84686       88 KSLAFLHTK     VRLESIGAEDIVDGNPRLILGLMWTIILR 125  common water flea
XP_030854994   91 KALKFLSSK.[1].VRLESIGAEDIADGNTRLILGLIWTVILR 129  purple sea urchin
XP_002732400   87 RCLTFLATK     VRLESIGAEDICDGNPILILGLIWTIILR 124  Saccoglossus kowalevskii
NP_741632     218 KVLDFLKKK.[1].IQLENIGAEDILDRNERLILGLIWTIILR 256  Caenorhabditis elegans
XP_013406633   86 KCLKFLAQK.[1].VQLENIGAEDIVDGNQRLILGLIWTIILR 124  Lingula anatina

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