Conserved Protein Domain Family
CYCLIN_AtCycA-like_rpt2

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cd20506: CYCLIN_AtCycA-like_rpt2 
second cyclin box found in Arabidopsis thaliana A-type cyclins (CycAs) and similar proteins
Plant A-type cyclins (CycAs) correspond to a group of G2/mitotic-specific cyclins that are functionally linked to S- and M-phases of the mitotic cycle, which predicts their involvement also in meiosis. CycAs associate with their partner cyclin-dependent kinases (CDKs) to trigger the kinase activity. They contain two cyclin boxes. This model corresponds to the second one. The cyclin box is a protein binding domain.
Statistics
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PSSM-Id: 410210
Aligned: 24 rows
Threshold Bit Score: 161.262
Created: 9-Jul-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative CDK
Feature 1:putative CDK interface [polypeptide binding site]
Evidence:
  • Comment:CDK = cyclin-dependent kinase
  • Comment:Based on the structure evidence that Homo sapiens CCNA2 (5IF1) binds CDK2.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1           ##  #                                                                       
Q9C6Y3       326 PTTKCFLRRFVRA.[9].MQLECMANYIAELSLLEYTML     SHSPSLVAASAIFLAKYI.[7].WNSTLQHYTQYK 405 thale cress
XP_003055968 217 PTTKTFLRRCLSA.[4].VKVDFLAGFLSELALLEYTFL     RYSQSTIAAASVSLALMT.[5].WSKTLEHYTHMF 289 Micromonas pusilla CC...
PSC76235     264 PTIKTFLRRYIKA.[8].VTFEFLCSYLAELTLMDYPML     NYLPSTIAASCVTVALWM.[5].WTPTLTHYSGYA 340 Micractinium conductrix
GBG61580     534 PTVMTFLWHFLRA.[4].KRMERTAEHIACLSMLDDGLL     ASPPSLIAAAVVFLASHT.[5].WSKSMTDWSGYS 606 Chara braunii
NP_001353271 335 PTINSFLPRFIKA.[4].SKTEHLTQYLAELTLQEYDFI     KYAPSMIAASAVCLANHT.[5].WTPTMAHYTDYQ 407 purple sea urchin
XP_002598359 197 PTINCFQKRFLQA.[4].SKTESLAMYLAELTLQEGETF.[1].KYVPSTIAAASLCLAQHT.[5].WTPTLMHYSGYT 270 Florida lancelet
XP_002738046 317 PTINVFLDRFLRA.[4].SKAECMARFLAELTLQEYEPY.[1].RYSQSTIAASAVCLANHT.[7].WTATLEHYTSFT 392 Saccoglossus kowalevskii
XP_002125998 297 PTSNQFLKRYLKS.[4].KKTEFLAQFLCELALVEFDCT     QYLPSMIAASSVCLASYT.[5].WDETMEHYMQYQ 369 vase tunicate
P51986       296 PTCRDFLSRYLFA.[6].SQLKYLAEYLSELTLINCDIS.[1].KYAPSMIAASSICVANHM.[5].WTPTLEFYSGYN 371 green hydra
XP_004334388 360 ATAKVFLRRYLKA.[4].LTLAFLASYLCEISLLEYNFL     QYLPSMVAAASVFLSLRT.[5].WTPTLDFYTSYR 432 Acanthamoeba castella...

Feature 1                                               
Q9C6Y3       406 .[1].MELRGCVKDLQRLC.[5].STLPAVREKYSQHKY 440 thale cress
XP_003055968 290 .[1].CDLRECVQALHTCH.[5].SSLSAVREKYSQMKF 324 Micromonas pusilla CCMP1545
PSC76235     341 .[1].RDLRHCAQAVHQLF.[5].SSLPAARDKYASPKF 375 Micractinium conductrix
GBG61580     607 .[1].SDLRQCVERLHAAQ.[7].GILTAIWDKYSAADH 643 Chara braunii
NP_001353271 408 .[1].GDIYPCVQDLHQLF.[5].MEQQAVREKYKSQKY 442 purple sea urchin
XP_002598359 271 .[1].ADLLPCVQDMHRSF.[5].SQQQAVREKYRSPKY 305 Florida lancelet
XP_002738046 393 .[1].QDILPCVRDLHHTF.[5].NQQQAVREKYKTQKL 427 Saccoglossus kowalevskii
XP_002125998 370 .[1].QDLAPCIKRLHEIL.[5].NSLQALFEKYKDAKY 404 vase tunicate
P51986       372 .[1].QDLRSCLNEIHLLH.[5].NPQQAIQQKYKSPKF 406 green hydra
XP_004334388 433 .[3].PTFQQCVRDLHQLQ.[5].CNLQAIHEKYAHQRF 469 Acanthamoeba castellanii str. Neff

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