Conserved Protein Domain Family
LGIC_ECD_GABAAR_A5

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cd19038: LGIC_ECD_GABAAR_A5 
extracellular domain of gamma-aminobutyric acid receptor subunit alpha-5 (GABAAR-A5 or GABRA5)
This family contains extracellular domain of gamma-aminobutyric acid receptor subunit alpha-5 (GABAAR-A5), a protein that is encoded by the GABRA5 gene in humans, with biased expression in the brain and heart. GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Upon gamma-aminobutyric acid (GABA) binding to the ligand binding site on the ECD, Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. The alpha-5 subunit forms heteropentamers with other GABAAR subunits, most broadly expressed as alpha5-beta-gamma2, and probably alpha5-beta3-gamma2, predominantly expressed in the hippocampus and localized extrasynaptically. These receptors have been demonstrated to play an important modulatory role in learning and memory processes, thus making them suitable targets for pharmacological intervention. Studies show that alpha5-containing GABAARs play an important part in tonic inhibition in hippocampal pyramidal neurons, and that these can also contribute to synaptic inhibition. Studies strongly suggest that amnesia is primarily mediated by alpha5-beta-gamma2. Polymorphisms in GABRA5 (and GABRA3) are linked to the susceptibility to panic disorder. A genetic association also exists between GABRA5 and bipolar affective disorder.
Statistics
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PSSM-Id: 349839
Aligned: 7 rows
Threshold Bit Score: 407.124
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                     #                           #                                      
XP_005618282 116 DGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHN 195 dog
NP_001158509  58 DGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHN 137 human
XP_004938526  58 DGYDNRLRPGLGERITQVKTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHN 137 chicken
XP_005166140  58 DGYDNRLRPGLGEKVTEIKTNIFVTSFGPVSDTEMEYTIDVFFRQSWKDERLCFKGPMEMLPLNNLLASNIWTPDTFFLN 137 zebrafish
XP_004911867  62 DGYDNRLRPGLGERITQVKTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLCFQGPMPRLPLNNLLASKIWTPDTFFHN 141 tropical clawed frog
KFO19724      58 DGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHN 137 Fukomys damarensis
P31644        58 DGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHN 137 human

Feature 1                                                                                        
XP_005618282 196 .[1].KKSIAHNMTTPNKLLRLEDDGTLLYTMR      LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SEVVY 261 dog
NP_001158509 138 .[1].KKSIAHNMTTPNKLLRLEDDGTLLYTMR      LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SEVVY 203 human
XP_004938526 138 .[1].KKSIAHNMTTPNKLLRLEDDGTLLYTMR      LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SEVIY 203 chicken
XP_005166140 138 .[1].KKSIAHNMTTPNKLLRLKDDGTLLYTMR      LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SEVVY 203 zebrafish
XP_004911867 142 .[1].KKSIAHNITTPNKLLRLEDDGTLLYTMR      LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SELRY 207 tropical clawed frog
KFO19724     138 .[1].KKSIAHNMTTPNKLLRLEDDGTLLYTMR.[84].LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SEVVY 287 Fukomys damarensis
P31644       138 .[1].KKSIAHNMTTPNKLLRLEDDGTLLYTMR      LTISAECPMQLEDFPMDAHACPLKFGSYAYP.[1].SEVVY 203 human

Feature 1                                                                     
XP_005618282 262 VWTNGT.[1].KSVVVAEDGSRLNQYHLMGQTVGTENISTSTG.[1].YTIMTAHFHLKRK 314 dog
NP_001158509 204 VWTNGS.[1].KSVVVAEDGSRLNQYHLMGQTVGTENISTSTG.[1].YTIMTAHFHLKRK 256 human
XP_004938526 204 VWTNST.[1].TSVVVAEDGSRLNQYHLMGQTVGTENISTSTG.[1].YTIMTAHFHLKRK 256 chicken
XP_005166140 204 KWTKGP.[1].KSVVVAEEGSRLNQYHLIGHTAGTEDISTSRG.[1].YTVMMAHFYLKRK 256 zebrafish
XP_004911867 208 EWTNIT.[1].KSVVVAEDGSRLNQYHLIGQTVGTENISTSTG.[1].YTVMTAHFHLKRK 260 tropical clawed frog
KFO19724     288 VWTNGS.[1].KSVVVAEDGSRLNQYHLMGQTVGTENISTSTG.[1].YTIMTAHFHLKRK 340 Fukomys damarensis
P31644       204 VWTNGS.[1].KSVVVAEDGSRLNQYHLMGQTVGTENISTSTG.[1].YTIMTAHFHLKRK 256 human

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