Conserved Protein Domain Family
LGIC_ECD_GABAAR_A4

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cd19037: LGIC_ECD_GABAAR_A4 
extracellular domain of gamma-aminobutyric acid receptor subunit alpha-4 (GABAAR-A4 or GABRA4)
This family contains extracellular domain of gamma-aminobutyric acid receptor subunit alpha-4 (GABAAR-A4), a protein that is encoded by the GABRA4 gene in humans, with biased expression in the brain and heart. GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Upon gamma-aminobutyric acid (GABA) binding to the ligand binding site on the ECD, Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. The alpha-4 subunit forms heteropentamers with other GABAAR subunits, most broadly expressed as combination of alpha2alpha4beta1gamma1, all four subunits existing on the same gene cluster. Alpha-4 is involved in the etiology of autism and eventually increases autism risk through interaction with the beta-1 (GABRB1) subunit. Polymorphism in GABRA4 may trigger migraine by ethanol, while another is associated to faster reaction times and with lower ethanol effects. A rare variant in GABRA4 may have modest physiological effect in autism spectrum disorder etiology.
Statistics
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PSSM-Id: 349838
Aligned: 5 rows
Threshold Bit Score: 408.681
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                     #                           #                                      
NP_001017822  57 DGYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWVDRRLRY.[1].GPVEILRLNNLMVTKVWTPDT 132 zebrafish
NP_776968     57 DGYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKY.[1].GPIEILRLNNMMVTKVWTPDT 132 cattle
XP_420724     56 DGYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWVDKRLKY.[1].GPIEILRLNNLMVSKVWTPDT 131 chicken
NP_000800     57 DGYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKY.[1].GPIEILRLNNMMVTKVWTPDT 132 human
AAH92794      57 DGYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWVDRRLRY.[1].GPVEILRLNNLMVTKVWTPDT 132 zebrafish

Feature 1                                                                                        
NP_001017822 133 FFRN.[1].KRSVAHNMTAPNRLFRIMKNGTILYTMRLTISAECPMRLVNFPMDGHSCPLKFGSYAYP.[2].EMIYTWT 205 zebrafish
NP_776968    133 FFRN.[1].KKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYP.[2].EMIYTWT 205 cattle
XP_420724    132 FFRN.[1].KKSVAHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYP.[2].EMIYTWT 204 chicken
NP_000800    133 FFRN.[1].KKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYP.[2].EMIYTWT 205 human
AAH92794     133 FFRN.[1].KRSVAHNMTAPNRLFRIMKNGTILYTMRLTISAECPMRLVNFPMDGHSCPLKFGSYAYP.[2].EMIYTWT 205 zebrafish

Feature 1                                                             
NP_001017822 206 KGP.[2].SVEVPPESSSLVQYDLIGQTVSSETVKSITGEYVVMTVYFHLKRK 255 zebrafish
NP_776968    206 KGP.[2].SVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRK 255 cattle
XP_420724    205 KGP.[2].SVEVPEESSSLVQYDLLGHTVSSETIKSITGEYIVMTVYFHLRRK 254 chicken
NP_000800    206 KGP.[2].SVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRK 255 human
AAH92794     206 KGP.[2].SVEVPPESSSLVQYDLIGQTVSSETVKSITGEYVVMTVYFHLKRK 255 zebrafish

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