Conserved Protein Domain Family
LGIC_ECD_nAChR_E

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cd19030: LGIC_ECD_nAChR_E 
extracellular domain of nicotinic acetylcholine receptor subunit epsilon (CHRNE)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit epsilon (epsilon), encoded by the CHRNE gene and found in adult skeletal muscle. Epsilon subunit forms a heteropentamer with (alpha1)2, beta and delta after birth, replacing the gamma subunit seen in embryonic receptors. The adult-type epsilon-AChR has a higher conductance and a shorter open time compared to embryonic gamma-AChR and the open channel is non-selectively cation permeable. Mutations of the CHRNE gene are the most common causes of congenital myasthenic syndrome (CMS), most of which are autosomal recessive loss-of-function mutations, resulting in endplate AChR deficiency. A highly fatal fast-channel syndrome is caused by AChR epsilon subunit mutation (Trp to Arg; changing environment from anionic to cationic) at the agonist binding site at the alpha/epsilon interface of the receptor, thus disrupting agonist binding affinity and gating efficiency.
Statistics
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PSSM-Id: 349831
Aligned: 8 rows
Threshold Bit Score: 420.573
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
pentamerCys-loop
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of nicotinic acetylcholine receptor subunits

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                  # #     ##      #                    # #            ## # ##   # ##   #
Q04844        49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNY.[6].GIETLRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 human
XP_536608     49 VTITLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNY.[6].GVETLRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 dog
NP_033733     49 VTITLKVTLTNLISLNEKEETLTTSVWIGIDWHDYRLNY.[6].GVGILRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 house mouse
NP_000071     49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNY.[6].GIETLRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 Homo sapiens
XP_523556     49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNY.[6].GIETLRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 Pan troglodytes
XP_001097094  49 VTISLKVTLTNLISLNEKEETLTTNVWIGIDWQDYRLNY.[6].GIEILRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 Macaca mulatta
NP_776697     49 VTISLKVTLTNLISLNEKEETLTTSVWIGIDWQDYRLNY.[6].GVETLRVPSE.[1].VWLPEIVLENNIDGQFGVAYE 125 Bos taurus
NP_058890     49 VTITLKVTLTNLISLNEKEETLTTSVWIGIEWQDYRLNF.[6].GVEILRVPSE.[1].VWLPEIVLENNIDGQFGVAYD 125 Rattus norvegicus

Feature 1        ## #         # # #   #                     #                                    
Q04844       126 ANVLVYEGGSVTWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYN.[1].EEVEFTFAVDNDGK.[5].DIDTEAYTE 201 human
XP_536608    126 ANVLIYEGGYVSWLPPAIYRSTCAVEVTYFPFDWQNCSLVFRSQTYN.[1].EEVDFVFAVDDDGE.[5].DIDTEAYTE 201 dog
NP_033733    126 SNVLVYEGGYVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYN.[1].EEVEFIFAVDDDGN.[5].DIDTAAFTE 201 house mouse
NP_000071    126 ANVLVYEGGSVTWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYN.[1].EEVEFTFAVDNDGK.[5].DIDTEAYTE 201 Homo sapiens
XP_523556    126 ANVLVYEGGSVRWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYN.[1].EEVEFTFAVDDDGK.[5].DIDTEAYTE 201 Pan troglodytes
XP_001097094 126 VNVLVYEDGSVTWLPPAIYRSVCAVEVTYFPFDWQNCSLIFRSQTYN.[1].EEVEFTFAVDDSGE.[5].DIDTEAYTE 201 Macaca mulatta
NP_776697    126 ANVLVSEGGYLSWLPPAIYRSTCAVEVTYFPFDWQNCSLVFRSQTYN.[1].EEVEFVFAVDDEGK.[5].DIDTEAYTE 201 Bos taurus
NP_058890    126 CNVLVYEGGSVSWLPPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYN.[1].EEVELIFAVDDDGN.[5].DIDTAAFTE 201 Rattus norvegicus

Feature 1                                           #
Q04844       202 NGEWAIDFCPGVIRRH.[7].PGETDVIYSLIIRRK 239 human
XP_536608    202 NGEWAIDFCPGLIRRP.[7].PGVVDIIYTLIIRRK 239 dog
NP_033733    202 NGEWAIDYCPGMIRRY.[7].PGETDVIYTLIIRRK 239 house mouse
NP_000071    202 NGEWAIDFCPGVIRRH.[7].PGETDVIYSLIIRRK 239 Homo sapiens
XP_523556    202 NGEWAIDFCPGVIRRH.[7].PGETDVIYSLIIRRK 239 Pan troglodytes
XP_001097094 202 NGEWAIDYCPGVIRRH.[7].PGETDVVYSLIIRRK 239 Macaca mulatta
NP_776697    202 NGEWAIDFCPGVIRRH.[7].PGETDVIYSLIIRRK 239 Bos taurus
NP_058890    202 NGEWAIDYCPGMIRHY.[7].PGETDVIYTLIIRRK 239 Rattus norvegicus

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