Conserved Protein Domain Family
W2_eIF5C_like

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cd11560: W2_eIF5C_like 
C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins
eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats.
Statistics
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PSSM-Id: 211398
Aligned: 33 rows
Threshold Bit Score: 246.356
Created: 8-Dec-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Q9Y6E2       218 ELFPVNRQSVDHFAKYFTDAGLKELSDFL.[2].QQSLGTRKELQKELQERLSQE.[3].KEVVLYVKEEMKRNDLPE 290 human
XP_001758587 216 DLFPMQKRSIEGFAEHFDKEGLSVLVEYN.[2].KVFDVKLKELLTTVTDQIAED.[3].ADVIEMVKQRRKEATLPD 288 Physcomitrella patens ...
XP_002992407 216 ELFPMQKRTPEAFAEHFRKEGLGVLVEYH.[2].KVFDVKLKELRTSLADQISAN.[3].GEVIETVKSRRKESLLPD 288 Selaginella moellendor...
Q53JB5       217 EFFPSAKRTSEALSEHFTKEGLTSLVEYN.[2].KMFEVKLKEIKLTLTTMINEE.[3].SEVTEAVKQQVKDAKFPD 289 Oryza sativa Japonica ...
EGO00197     224 AFFPPNRRSAKLLDEHFKKEGLPQVAEWY.[2].KQYAVVKEGIVSELKELSDHG.[3].EAIIAAIHSKQEELPLPE 296 Serpula lacrymans var....
EGG10695     224 GFFPPHQRERSDLEAHFKSEKLDAIITFA.[2].QKSGQIRDETLAHLKEMVASE.[3].AEIIAFLREQALTGVIPD 296 Melampsora larici-popu...
CCA73080     224 DFFPLNKRNPTELDDWFKKEGMENVAEWY.[2].KRLVKIRDAVISGLKELVEKD.[3].DSLISFLKDTQAETPVPE 296 Piriformospora indica
GAA97331     230 LFFPPNKRTMAFAAEHFKKENLDKVWEFY.[2].QRSAGIREEMAEHLRTMVANE.[3].EEIATYLKEQFKSEAVSD 302 Mixia osmundae IAM 14324
Q5KI79       235 AVFPLQIRDRKHLEAHFREENLQVVNDWY.[2].LALGEVKDETVQAVERMINDD.[3].DQIIEALKLQQSERPVSE 307 Cryptococcus neoformans
XP_001691456 227 DFAPPNKRTPHEYHLVLKAAGLNSLVEWD.[2].REIDLRVSELQDALTEAIAAD.[5].SEVLNIAKSKKQESNLPD 301 Chlamydomonas reinhardtii

Q9Y6E2       291 .[1].AVIGLLWTCIMNAVEWNKK     EELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQEYCYDNIHFMKAFQ 361 human
XP_001758587 289 .[1].DVVRTIWDATMDAVQWSGK.[1].QQQNSNLALRQVKQWGKLLGAFCTTAKLETDLMYKIQIHCYEDAKLMKLFP 360 Physcomitrella paten...
XP_002992407 289 .[1].DVVRTVWDALMDAVQWSGK.[1].QQQNVNLALRQVKTWGSLLGEVCTSAKLEMELMYKIQVHCYEDAKLMKLFP 360 Selaginella moellend...
Q53JB5       290 .[1].EVVRMLWDVLMEAVQWSGK.[1].QQQNSNSALRQVKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAKLMKLFP 361 Oryza sativa Japonic...
EGO00197     297 .[1].ELIQCIWQGLIASVDWSAR     PDQIEGLALREVGKFSTILEPFCKGPKIEVALINVVQVYCYEDTRIMKAFP 367 Serpula lacrymans va...
EGG10695     297 .[1].EFIALVWAGLMHSLDMGSR     PDQIVDMVVKEVTAVAPVLACFCENGRTQISLINTIQVWAYENTKIMGAFA 367 Melampsora larici-po...
CCA73080     297 .[1].DLVGYIWTALIGNVDWGTR     PDQVDALAIREVTKYAEVLEPFCNGPKTEVSLINTVQLYCYEESKVMKTFP 367 Piriformospora indica
GAA97331     303 .[1].DFLATIWTNLLSDVDAAAS     AQQACETALKEIKDIVPLLEPYASSARAQVGLINTIQGWCYEQTKAMAVFP 373 Mixia osmundae IAM 1...
Q5KI79       308 .[1].DLSEWIWLALMGTVDWTAR     SDQIDTFVISHITRYASILETFCQSAKAQVNLINAVQVYCYTDTRIIKSFV 378 Cryptococcus neoformans
XP_001691456 302 .[1].EVLRVSWLALMKSINLTGK.[1].QQQITQALMQKLKSHGKLFATFATNAKAELALLNTIQVFCYEDTRMLKCFT 373 Chlamydomonas reinha...

Q9Y6E2       362 KIVVLFYKADVLSEEAILKWYK.[1].AHVAKGKSVFLDQMKKFVEWLQNAEEE 411 human
XP_001758587 361 DIIRALYEQDVLAEDTILKWFK.[1].GTNPKGRQTFVKGLEPFVKWLEEAEEE 410 Physcomitrella patens subsp. patens
XP_002992407 361 EMVRALYDQDVLAEDTILTWFR.[1].GANPKGRQIFAKSLEPFVQWLEEAEEE 410 Selaginella moellendorffii
Q53JB5       362 EIIRTLYDQDVLAEDTILLWFR.[1].GSNPKGRQSFVKALEPFVKWLEEAEEE 411 Oryza sativa Japonica Group
EGO00197     368 QILKVLYNKDCITDQAIIYWYQ.[1].GSKPQGRQHFLKSTEALVKFLQEQESD 417 Serpula lacrymans var. lacrymans S7.3
EGG10695     368 RILKELYAHDVVSDQAVLYWHS.[1].GSKPQARQHFLKSSEPLVKFLQEQDDD 417 Melampsora larici-populina 98AG31
CCA73080     368 QMLKVLYNKDCISDQAILYWHS.[1].GSKPQGRQHFLTVTQPLVKFLQEQDSD 417 Piriformospora indica
GAA97331     374 RALKMLYAADVLSDNAILYWHS.[1].GSKPAGRQHFLTASEPLIKFLQEQEES 423 Mixia osmundae IAM 14324
Q5KI79       379 QILKVLYNADVVSDQAIIYWHQ.[1].GAKPNGKGHFLKVAEPLVKFLSEQESD 428 Cryptococcus neoformans
XP_001691456 374 DIMKLLYNAEIVGEDTIQHWYK.[1].GSHTKGRAVFLKDIEPFMKWLEEAEED 423 Chlamydomonas reinhardtii
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