Conserved Protein Domain Family
bHLH_TS_Mesp_like

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cd11425: bHLH_TS_Mesp_like 
basic helix-loop-helix (bHLH) domain found in mesoderm posterior protein (Mesp) family
Mesp, a bHLH tissue specific transcription factor, acts as a key regulator of the cardiovascular transcriptional network by inducing directly and/or indirectly the expression of the majority of key cardiovascular transcription factors. The Mesp family includes two bHLH transcription factors, Mesp1 and Mesp2. Mesp1, also termed Class C basic helix-loop-helix protein 5 (bHLHc5), promotes cardiovascular differentiation during embryonic development and embryonic stem cell differentiation. Mesp2, also termed Class C basic helix-loop-helix protein 6 (bHLHc6), plays an important role in somitogenesis. The family also includes mesogenin-1 (Msgn1) and similar proteins. Msgn1, also termed paraxial mesoderm-specific mesogenin1, or pMesogenin1 (pMsgn1), is a bHLH transcription factor required for maturation and segmentation of paraxial mesoderm. It may regulate the expression of T-box transcription factors essential for mesoderm formation and differentiation.
Statistics
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PSSM-Id: 381431
Aligned: 5 rows
Threshold Bit Score: 95.2499
Created: 19-Sep-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Mus musculus myoD (1MDY) basic region binds DNA.
  • Citation:PMID 8181063

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1         #   # ### #    #                 ####                   
A6NI15       125 RRRKASEREKLRMRTLADALHTLRNYLP.[7].QPLTKIQTLKYTIKYIGELTDLLN 183 human
Q9BRJ9        83 QRQSASEREKLRMRTLARALHELRRFLP.[7].QSLTKIETLRLAIRYIGHLSAVLG 141 human
ABD57444      78 QRQAANERERVRMQNLTAALGVLREHIP.[7].KRLSKIETLKLAIGYIDYLRRVLQ 136 Florida lancelet
PFX24557      32 QRQTANARERSRMRSISAAMLELRYHLP.[7].KKLSKIQTLRYAIRYIGDLFEVLQ 90  Stylophora pistillata
NP_001161586  96 DRSLANKRERDRMHKIIDGLGSLRQVLP.[5].KRLSKINTLKSAIEYIGYLGNLLE 152 Saccoglossus kowalevskii

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