Conserved Protein Domain Family
PR-SET_PRDM17

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cd10520: PR-SET_PRDM17 
PR-SET domain found in PR domain zinc finger protein 17 (PRDM17) and similar proteins
PRDM17 (also termed zinc finger protein 408 (ZNF408)) may be involved in transcriptional regulation.
Statistics
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PSSM-Id: 380918
Aligned: 8 rows
Threshold Bit Score: 161.433
Created: 8-Jan-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputative SAM
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on the structure evidence that Mus musculus PRDM9 binds H3k4me2 and S-adenosylhomocysteine (AdoHcy) through its PR-SET domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                      #       ###                    #             ##### #           ## 
Q9H9D4        53 ALKSLPRGLALGPSLA.[1].EQRLGVWCVG.[2].LQPGLLWGPLEEES.[32].GWTSLVQRGRLE.[2].GNVAPVR 148  human
NP_079017     53 ALKSLPRGLALGPSLA.[1].EQRLGVWCVG.[2].LQPGLLWGPLEEES.[32].GWTSLVQRGRLE.[2].GNVAPVR 148  human
XP_005987038  56 ALGTLPPGLAVGPSRA.[1].EKRMGIWCVE.[2].LQKGIFFGPLEGDL.[63].KPSSFASLAQSK.[2].RNVAEFT 182  coelacanth
XP_007903024  62 AFYTLPLGLAAGPSQL.[1].QNRLGIWCVA.[2].IAKGTFFGPLEGKL.[36].NWMRYTNWAETK.[2].SNASVFL 161  elephant shark
NP_001315204  21 ALRSVPLGLTVGPSLA.[1].DEQLGLWCVG.[2].LKKDTLLGLEEPGE.[26].CWMQFACSAQSA.[2].SNVSVLK 110  zebrafish
XP_007069809  28 ALRSLPPGLALGPSLA.[1].EPGMGVWCVG.[2].LPPGALLGPRAEEE.[28].SWRRLVKRGRGE.[2].ANVALVW 119  green sea turtle
PIO38692      42 ALCSLPRGLALGPSLS.[1].GEGLGLWCVG.[2].LPAGSFLPPHIHET.[20].KWVRFARSSPKH     VNVRICN 123  bullfrog
XP_015194161  55 LLRTLPPGLALGPSLA.[1].GSCIGVWCVG.[2].VHKGAFFGPLENCA.[29].NWIRFACRAGSE.[2].WNACVLR 147  spotted gar

Feature 1                                 ##    
Q9H9D4       149 .[2].ERLHLQVYQLVLPGSELLLWPQPSSE 176  human
NP_079017    149 .[2].ERLHLQVYQLVLPGSELLLWPQPSSE 176  human
XP_005987038 183 .[2].GKIYFRVCKVIEPGAELLVWPEDATV 210  coelacanth
XP_007903024 162 .[2].GKMYFRVWKTIELGQELLLWPEENQA 189  elephant shark
NP_001315204 111 .[2].GRLGLKVCRDIQPGTELLLWESHPEA 138  zebrafish
XP_007069809 120 .[2].GRLHVRVRRPIAAGTELLYWPTEAQA 147  green sea turtle
PIO38692     124 .[2].GSLHLQVISPIQPGSELLILQEDNGN 151  bullfrog
XP_015194161 148 .[2].GRPYVKALEDIEPGVELLLRPGEEGE 175  spotted gar

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