Conserved Protein Domain Family
PTKc_CSF-1R

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cd05106: PTKc_CSF-1R 
Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor PTKs (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. The CSF-1R subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 133237
Aligned: 6 rows
Threshold Bit Score: 774.404
Created: 10-Jul-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:active site [active site]
Evidence:
  • Comment:includes ATP binding and substrate binding sites
  • Comment:Based on the structures of other PTK family members bound to substrate peptides and ATP analogs, as well as the structure of human c-Kit bound to MgADP.
  • Citation:PMID 9312016

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                                                     ## #### #                     # #  
Q00495       541 KPKYQVRWKIIERYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLG.[1].EDAVLKVAVKML 616  Norway rat
P79750       545 KPRFEIRWKIIEAREGNNYTFIDPTQLPYNEKWEFPRDKLKLGKVLGAGAFGKVVEATAFGLG.[2].KDNTLRVAVKML 621  torafugu
CAD10625     550 KPRYEIRWKIIQASEGNNYTFIDPTQMPYNEKWEFPRDKLKLGKILGAGAFGKVVEATAYGLG.[1].DDNAMRVAVKML 625  rainbow trout
AAT08795     545 KPRYEIRWKIIEATNGNNYSFIDPTQLPYNEKWEFPRDKLKLGKTLGAGAFGKVVEATAYGLG.[1].EDNVTRVAVKML 620  goldfish
NP_001008181 523 KPKYEIRWQIIQPAEGNNYTCIDPTQLPYNDKWEFPRTNLQFGKTLGAGAFGKVMEATAVGLG.[1].EDSAVTVAVKML 598  western clawed frog
XP_414597    538 KPKYQVRWKIIEACEGNNYIFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLG.[1].EDSVLKVAVKML 613  chicken

Feature 1                                                     # #   #                            
Q00495       617 KSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAML.[10].EGDSSYKNI 700  Norway rat
P79750       622 KANAHSDEREALMSELKILSHLGHHQNIVNLLGACTYGGPVLVITEYCSLGDLLNFLRQKAETFV.[10].ENSNDYKNI 705  torafugu
CAD10625     626 KARAHSDEREALMSELKILSHLGQHKNIVNLLGACTQAGPVLVITEYCSHGDLLNFLRHKQETFL.[10].EETSDYKNL 709  rainbow trout
AAT08795     621 KASAHPDEREALMSELKILSHLGQHKNIVNLLGACTQSGPVLVITEYCCHGDLLNFLRSKAENFL.[ 7].NPEMDYKNI 701  goldfish
NP_001008181 599 KPSAHTDEVEALMSELKILSHLGNHKNIVNLLGACTHGGPILVITEYCHYGDLLNFLRKKAQIMN.[11].STSSDYKNM 683  western clawed frog
XP_414597    614 KSTADTDEQEALMSELKIMSHLGHHANIVNLLGACTYGGPILVITEYCRYGDLLNFLRKKAEYII.[10].DSTADYKNI 697  chicken

Feature 1                                                                                      # 
Q00495       701 HLEKKYVRRDSGFSSQGVDTYVEMRPVSTSSSDS.[ 3].QDLDKEPSRPLELWDLLHFSSQVAQGMAFLASKNCIHRDV 777  Norway rat
P79750       706 CNQKWYIRSDSGISSTSSSTYLEMRPSQQSHIEA.[ 4].SLCEDNGDWPLDIDDLLRFSLQVAQGLDFLASRNCIHRDV 783  torafugu
CAD10625     710 CEGKQFIRSDSGISSVCSDSYLEMRPGPQPVNSS.[ 4].CEDGGPDSWPLDMEDLLRFSYQVAQGLDFLAAKNCIHRDV 787  rainbow trout
AAT08795     702 TTERMFIRSDSGISSTCSDNYLAMRPASSRPTNS.[ 6].DCEQTEDSWPLDMDDLLRFSHQVAQGLDFLAAKNCIHRDV 781  goldfish
NP_001008181 684 TIEHKYIKSDSGFLSKGTDSYVEMKPVSSLSSQG.[ 4].DEKDTDDMLPLDLYDLLSFSFQVSQGMSFLSAKNCIHRDV 761  western clawed frog
XP_414597    698 DLEKKYIRSDSGFASQGLETYVEMRPISSSSSVS.[12].EDETREDLQPLNLSDLLQFSSQVAQGMAFLASKNCIHRDL 783  chicken

Feature 1          ## #          #                 #####        #                                
Q00495       778 AARNVLLTSGHVAKIGDFGLARDIMNDSNYVVKGNARLPVKWMAPESILYCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 857  Norway rat
P79750       784 AARNVLLTDKRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPSM 863  torafugu
CAD10625     788 AARNVLLTDLHVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCLYTVQSDVWSYGILLWEIFSLGKSPYPSI 867  rainbow trout
AAT08795     782 AARNVLLTNSRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPNI 861  goldfish
NP_001008181 762 AARNVLVSHGRVVKICDFGLARDIENDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEMFSLGRSPYPGI 841  western clawed frog
XP_414597    784 AARNVLVSDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGM 863  chicken

Feature 1          #                                                     
Q00495       858 LVNNKFYKLVKDGYQMAQPVFAPKNIYSIMQSCWDLEPTRRPTFQQICFLLQEQAR 913  Norway rat
P79750       864 AVDSRFYKMVKRGYQMSQPDFALPEIYMIMKMCWNLEPTERPTFSMISQMINRLLG 919  torafugu
CAD10625     868 LVDTKFYNMIKCGYQMSRPDFAPPEMYTIMKMCWNLEPTERPTFSKISQLIERLLG 923  rainbow trout
AAT08795     862 LVDSKFYKMIKSGYQMSRPDFASPEMYTIMKMCWNLDAAERPTFSKISQLIERMLG 917  goldfish
NP_001008181 842 MVNRKFYKMIKEGYKMDCPDYAPLEIYRIMKTCWDLEPTQRPTFNQISTLISKQIN 897  western clawed frog
XP_414597    864 AVNSKFYSMVKRGYQMARPDFAPLEMYSIMQACWSLEPTQRPTFDQICCFIQKELD 919  chicken

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