New Search Structure Home MMDB Conserved Domains PubChem PubMed Entrez BLAST Help Structure related to [gi|29836496|ref|NP_828851.1|] E2 glycoprotein precursor [SARS coronavirus] 8 Low redundancy structures identified View  All similar MMDB Non-identical High redundancy Medium redundancy Low redundancy  sequences, sort by  BLAST E-value BLAST bit score Sequence Identity Aligned Length  and display as  graphic table  at  sequences per page Go « Previous page Jump to page of Next page » Structures    E-value    1e-112 1e-23 1e-16 1e-15 1e-13 1e-09 1e-05 1e-05 « Previous page Jump to page of Next page » References: Wang Y, Addess KJ, Chen J, Geer LY, He J, He S, Lu S, Madej T, Marchler-Bauer A, Thiessen PA, Zhang N, Bryant SH (2007), MMDB: annotating protein sequences with Entrez's 3D-structure database, Nucleic Acids Res. 35:(D)298-300. Help | Disclaimer | Write to the Help Desk NCBI | NLM | NIH

117948 pfam09408 Spike_rec_bind Spike receptor binding domain 6,316,0,5,322,5,111,434,116,3,468,119,12,486,131,31,519,162,50 false 117948 pfam09408 Spike_rec_bind Spike receptor binding domain -1 32823 COG3006 MukF Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] 6,878,158,25,903,187,8,911,199,39,955,238,19,974,259,16,990,280,8 false 142673 cl11468 KicB KicB killing factor -1 110594 pfam01601 Corona_S2 Coronavirus S2 glycoprotein 12,683,36,96,779,134,10,789,145,29,818,175,55,877,230,36,913,280,155,1068,436,6,1074,448,63,1137,514,13,1153,527,17,1170,558,30,1207,588,29 true -1

146613 35213 2AJF_E Chain E, Structure Of Sars Coronavirus Spike Receptor-Binding Domain Complexed With Its Receptor 78101364 1 327756 74527 2BEQ_D Chain D, Structure Of A Proteolytically Resistant Core From The Severe Acute Respiratory Syndrome Coronavirus S2 Fusion Protein 253722494 1 327753 74527 2BEQ_A Chain A, Structure Of A Proteolytically Resistant Core From The Severe Acute Respiratory Syndrome Coronavirus S2 Fusion Protein 253722491 1 165605 38998 1ZVB_A Chain A, A Structure-Based Mechanism Of Sars Virus Membrane Fusion 109157065 1 112770 28457 1WDG_A Chain A, Crystal Structure Of Mhv Spike Protein Fusion Core 50514031 1 189775 43916 2IEQ_B Chain B, Core Structure Of S2 From The Human Coronavirus Nl63 Spike Glycoprotein 126030743 1 112770 28457 1WDG_A Chain A, Crystal Structure Of Mhv Spike Protein Fusion Core 50514031 2 137207 33203 1T98_A Chain A, Crystal Structure Of Mukf(1-287) 67463819 1

The "Protein Families" text link opens a cutomizable view of the conserved domains found on the protein chain. This is the results page for a CD-Search of the protein chain against the Conserved Domain Database. The domain families are determined through the identification of blocks of amino acid residues that have been conserved across a broad range of taxonomic nodes and therefore represent recurring units of molecular evolution. The CDD help document provides more details about domains as well as specific hits, superfamilies, and multi-domains.