PubMed Entrez BLAST OMIM Books TaxBrowser Entrez Structure
  Search Entrez  for

CASP3 at LLNL

Official CASP3 site

CASP3 results

Official CASP3 evaluation


CASP3 at NCBI


Cn3D v4.1

3D-structure viewer

VAST

Structure comparisons

VAST Search

Submit structure database searches

Research

Research topics and staff


CASP3 Threading models crossing accuracy thresholds:

CASP3/BEST The table below lists threading/fold recognition models submitted to CASP3 which cross a specific model accuracy threshold. 50% or more of the model must be aligned in agreement with structure superpositions; the numerical evaluation quantities "sf0" and "sf4" have been used to determine model correctness. Models must also include at least 45% of a chain's/domain's residues, and they must have been recognized by the threading assessor as having the correct 3D "Fold". Use hotlinks in the table to visualize models and superpositions on the actual target structure if available. To see the complete evaluation tables and to view superpositions on confidential target structures use this link. Numbers of correctly predicted targets per team are summarized here.

Prediction Team Superposition  PDB C D ALen ARms ASp4 Shft CSpc
T0046AL003_1 Hubbard confidential 1FNA   0 86 8.16 69.77 1.483 46.55
T0046AL009_4 Xu-Ying confidential 1MSP A 0 54 6.83 68.52 1.614 67.02
T0046AL017_2 Sjolander confidential 1GGT A 0 102 8.08 72.55 1.615 19.20
T0046AL061_1 Yang confidential 3HHR C 0 98 8.38 - - 31.20
T0046TS061_1 Yang confidential 3HHR C 0 109 8.48 - - 31.11
T0046AL074_1 Sternberg confidential 3HHR C 0 106 12.70 - - 33.33
T0046AL212_1 Bryant confidential 3DPA   0 84 6.62 66.67 1.467 50.99
T0046AL212_2 Bryant confidential 1MSP A 0 90 7.84 58.89 2.047 31.19
T0046AL212_4 Bryant confidential 3DPA   0 86 8.30 66.28 1.661 43.75
T0053TS005_1 Jones [CA] [Detail] 1AK1   0 250 10.71 60.80 4.135 28.17
T0053AL009_1 Xu-Ying [CA] [Detail] 1AK1   0 168 6.43 83.93 3.056 17.78
T0053TS009_1 Xu-Ying [CA] [Detail] 1AK1   0 264 7.70 77.04 2.787 15.76
T0053AL162_1 Coulson [CA] [Detail] 1AK1   0 151 7.06 56.95 2.032 21.89
T0053AL176_1 UNAGI [CA] [Detail] 1AK1   0 254 12.78 68.90 4.817 34.38
T0053AL212_1 Bryant [CA] [Detail] 1AK1   0 203 8.59 68.47 2.750 35.07
T0053AL212_2 Bryant [CA] [Detail] 1AK1   0 204 5.96 81.37 1.751 39.31
T0053AL212_3 Bryant [CA] [Detail] 1AK1   0 212 7.44 74.53 3.249 25.92
T0054TS005_2 Jones confidential 1VHH   0 138 11.45 65.05 3.259 32.65
T0054AL166_1 SB-Fold confidential 1LBU   0 116 8.80 58.62 0.779 40.79
T0054AL212_1 Bryant confidential 1LBU   0 94 10.80 56.52 1.019 39.33
T0063TS005_1 Jones [CA] [Detail] 1AH9   0 60 4.84 71.43 1.314 51.69
T0063AL066_1_1 Fischer [CA] [Detail] 1AH9   0 46 3.11 65.22 0.267 77.63
T0071AL212_4 Bryant [CA] [Detail] 3DPA   0 84 8.48 67.86 2.106 35.42
T0079AL028_4 Godzik [CA] [Detail] 1SMT A 0 65 10.83 0.00 45.000 7.14
T0079TS035_2 Baker [CA] [Detail] NONE 129 11.55 - - 32.59
T0079AL076_1 Bass [CA] [Detail] 1LEA   0 69 7.83 - - 19.44
T0079AL084_1 DiFrancesco [CA] [Detail] 1TAM   0 62 8.63 - - 4.17
T0079AL156_1_1 Benner [CA] [Detail] 1OCT C 0 41 5.25 - - 22.58
T0079AL156_1_2 Benner [CA] [Detail] 1OCT C 0 39 6.50 - - 23.08
T0079AL212_2 Bryant [CA] [Detail] 1SMT A 0 51 4.33 47.06 0.000 37.50
T0079TS217_1 Sippl [CA] [Detail] 2DTR   0 65 6.71 - - 9.52
T0081TS005_1 Jones [CA] [Detail] 2CMD   0 128 10.48 - - 25.21
T0081AL019_1 UCSC [CA] [Detail] 3CHY   0 107 13.87 - - 23.12
T0081AL166_1 SB-Fold [CA] [Detail] 1JDB B 0 109 2.93 90.83 0.091 70.29
T0081AL212_1 Bryant [CA] [Detail] 1JDB K 0 100 3.04 93.00 0.075 69.43
T0081AL212_2 Bryant [CA] [Detail] 1JDB K 0 110 3.21 90.00 0.000 72.19
T0081AL212_3 Bryant [CA] [Detail] 1JDB K 0 101 3.57 91.09 0.315 64.67
T0081TS217_1 Sippl [CA] [Detail] 1IPH A 0 130 11.66 46.15 1.635 39.11
T0081AL273_1 Reva [CA] [Detail] 1PED A 0 139 15.78 40.29 1.732 23.91
T0081AL273_3 Reva [CA] [Detail] 1DEH A 0 136 15.52 54.41 1.973 17.67
T0083TS005_1 Jones [CA] [Detail] 1LMB 3 0 84 10.05 70.24 0.271 43.75
T0083AL017_1 Sjolander [CA] [Detail] 1LMB 4 0 88 14.55 63.64 0.518 42.67
T0083AL017_2 Sjolander [CA] [Detail] 1LLI A 0 86 13.03 68.60 0.610 35.53
T0083AL019_1 UCSC [CA] [Detail] 1LMB 3 0 84 14.56 69.05 0.000 34.94
T0083AL028_1 Godzik [CA] [Detail] 1ADR   0 65 4.91 - - 44.74
T0083AL028_2 Godzik [CA] [Detail] 1LLI A 0 81 12.88 71.60 0.121 38.57
T0083AL176_1 UNAGI [CA] [Detail] 1R69   0 63 3.51 - - 42.42


Updated 05/16/05

Privacy statement

Disclaimer

 
Help Desk NCBI NLM NIH Credits