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BUILD 130
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dbSNP Summary
RELEASE: NCBI dbSNP Build 130

dbSNP Component Availability Dates:

Component Date available
dbSNP web query for build 130: Apr 30, 2009
ftp data for build 130: May 03, 2009
Entrez Indexing for build 130: May 03, 2009
BLAST database for build 130: May 03, 2009

-  The complete data for build 130 are available at ftp://ftp.ncbi.nih.gov/snp/ in multiple formats.
-  All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.

-  Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.

New Submission since previous build:
Organism Current
Build
New Submissions
(ss#'s)
New RefSNP Clusters
(rs#'s) ( # validated)
New ss# with
Genotype
New ss# with
Frequency
Homo sapiens 13025,640,212 3,533,618 (0) 21,142
Mus musculus 12822,261 (0)
Oryza sativa 128225 (0)
Rattus norvegicus 126487 2,700,277 (0)
Canis familiaris 12663 (0)
Bos taurus 128183,517 247,500 (0) 90
Equus caballus 1281,163,543 1,163,554 (0) 9
Anopheles gambiae 1286,925 (0)
Sus scrofa 128140,047 (0) 6
Glycine max 12718,592 (0)
Ovis aries 128382 (0) 24
Bos indicus x Bos taurus 12818 100 (0)
Macaca mulatta 128448 (0) 424
Salmo salar 128417 (0)
Oncorhynchus mykiss 128135 (0)
Oncorhynchus tshawytscha 126190 (0)
Macaca fascicularis 12839 (0)
Ficedula albicollis 12646 (0)
Total: 18 Organisms 27,177,547 7,645,049 () 21,695


*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.

BUILD STATISTICS:
Organism dbSNP
Build
Genome
Build
Number of
Submissions
(ss#'s)
Number of
RefSNP Clusters
(rs#'s) ( # validated)
Number of
(rs#'s)
in gene
Number of
(ss#'s)
with
genotype
Number of
(ss#'s)
with
frequency
Homo sapiens 130 36.379,485,538 17,804,034 (6,573,584) 7,344,853 803,600
Mus musculus 128 37.118,667,322 14,380,528 (6,447,366) 5,878,592
Oryza sativa 128 4.15,872,306 5,418,373 (22,057) 1,897,895
Gallus gallus 128 2.13,641,965 3,293,383 (3,280,002) 1,452,147
Rattus norvegicus 126 4.12,755,176 2,743,905 (1,605) 18,881
Canis familiaris 126 2.13,527,071 3,301,322 (217,525) 982,946 17
Bos taurus 128 3.12,485,282 2,457,983 (13,881) 577,507 369
Pan troglodytes 127 2.11,544,900 1,543,208 (112,654) 527,665 1,544,895 2
Equus caballus 128 1.11,163,580 1,163,580 (0) 9
Monodelphis domestica 128 2.11,196,103 1,194,131 (0) 287,496
Anopheles gambiae 128 2.21,375,831 1,131,534 (0)
Apis mellifera 128 4.11,118,192 1,117,049 (16) 69,462
Danio rerio 128 2.1700,855 662,322 (3,091) 305,414
Felis catus 127 1.1327,037 327,037 (0)
Plasmodium falciparum 127 185,071 185,071 (47) 199
Sus scrofa 128 1.1167,740 8,427 (24) 139
Saccharum hybrid cultivar 126 42,853 42,853 (0)
Glycine max 127 18,873 278 (234)
Drosophila melanogaster 128 8.327,377 11 (0)
Zea mays 128 4,932 4,932 (80)
Ovis aries 128 4,629 4,181 (66) 59
Bos indicus x Bos taurus 128 3.12,445 2,486 (42) 137 2
Macaca mulatta 128 1.11,237 780 (519) 601 1,148
Salmo salar 128 1,172 755 (0) 10
Caenorhabditis elegans 128 7.11,065 1,065 (0)
Pinus pinaster 126 1,439 32 (0)
Cooperia oncophora 126 426 426 (96) 425
Oncorhynchus mykiss 128 449 400 (0) 304
Vitis vinifera 129 1,029 (0) 88
Oncorhynchus tshawytscha 126 681 (0) 52
Arabidopsis thaliana 128 7.1301 301 (184)
Macaca fascicularis 128 1.1153 114 (0) 153
Anopheles funestus 126 354 (0)
Ficedula albicollis 126 83 37 (15) 37
Oncorhynchus keta 127 212 (0)
Oncorhynchus nerka 127 118 (0)
Allium cepa 127 45 50 (0)
Ficedula hypoleuca 126 28 20 (10) 28
Agelaius phoeniceus 126 47 (0)
Oncorhynchus kisutch 127 40 (0)
Oreochromis niloticus 127 26 (0)
Bison bison 128 3.16 6 (2) 2 6
Hydroides elegans 126 8 7 (1)
Schistosoma mansoni 127 8 (0) 2
Gorilla gorilla 127 2 (0)
Total: 45 Organisms 15
genomes
124,324,007 56,790,621 (16,673,101) 19,343,598 1,545,094 806,450



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Revised: May 25, 2006 1:38 PM .