dbSNP Summary

dbSNP Summary

RELEASE: NCBI dbSNP Build 130

dbSNP Component Availability Dates:

Component	Date available
dbSNP web query for build 130:	Apr 30, 2009
ftp data for build 130:	May 03, 2009
Entrez Indexing for build 130:	May 03, 2009
BLAST database for build 130:	May 03, 2009

- The complete data for build 130 are available at ftp://ftp.ncbi.nih.gov/snp/ in multiple formats.
- All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.

- Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.

New Submission since previous build:

Organism	Current Build	New Submissions (ss#'s)	New RefSNP Clusters (rs#'s) ( # validated)	New ss# with Frequency
Homo sapiens	130	25,640,212	3,533,618 (0)	21,142
Mus musculus	128	22,261	(0)
Oryza sativa	128	225	(0)
Rattus norvegicus	126	487	2,700,277 (0)
Canis familiaris	126	63	(0)
Bos taurus	128	183,517	247,500 (0)	90
Equus caballus	128	1,163,543	1,163,554 (0)	9
Anopheles gambiae	128	6,925	(0)
Sus scrofa	128	140,047	(0)	6
Glycine max	127	18,592	(0)
Ovis aries	128	382	(0)	24
Bos indicus x Bos taurus	128	18	100 (0)
Macaca mulatta	128	448	(0)	424
Salmo salar	128	417	(0)
Oncorhynchus mykiss	128	135	(0)
Oncorhynchus tshawytscha	126	190	(0)
Macaca fascicularis	128	39	(0)
Ficedula albicollis	126	46	(0)
Total: 18 Organisms		27,177,547	7,645,049 ()	21,695

*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.

BUILD STATISTICS:

Organism	dbSNP Build	Genome Build	Number of Submissions (ss#'s)	Number of RefSNP Clusters (rs#'s) ( # validated)	Number of (rs#'s) in gene	Number of (ss#'s) with genotype	Number of (ss#'s) with frequency
Homo sapiens	130	36.3	79,485,538	17,804,034 (6,573,584)	7,344,853		803,600
Mus musculus	128	37.1	18,667,322	14,380,528 (6,447,366)	5,878,592
Oryza sativa	128	4.1	5,872,306	5,418,373 (22,057)	1,897,895
Gallus gallus	128	2.1	3,641,965	3,293,383 (3,280,002)	1,452,147
Rattus norvegicus	126	4.1	2,755,176	2,743,905 (1,605)	18,881
Canis familiaris	126	2.1	3,527,071	3,301,322 (217,525)	982,946		17
Bos taurus	128	3.1	2,485,282	2,457,983 (13,881)	577,507		369
Pan troglodytes	127	2.1	1,544,900	1,543,208 (112,654)	527,665	1,544,895	2
Equus caballus	128	1.1	1,163,580	1,163,580 (0)			9
Monodelphis domestica	128	2.1	1,196,103	1,194,131 (0)	287,496
Anopheles gambiae	128	2.2	1,375,831	1,131,534 (0)
Apis mellifera	128	4.1	1,118,192	1,117,049 (16)	69,462
Danio rerio	128	2.1	700,855	662,322 (3,091)	305,414
Felis catus	127	1.1	327,037	327,037 (0)
Plasmodium falciparum	127		185,071	185,071 (47)		199
Sus scrofa	128	1.1	167,740	8,427 (24)			139
Saccharum hybrid cultivar	126		42,853	42,853 (0)
Glycine max	127		18,873	278 (234)
Drosophila melanogaster	128	8.3	27,377	11 (0)
Zea mays	128		4,932	4,932 (80)
Ovis aries	128		4,629	4,181 (66)			59
Bos indicus x Bos taurus	128	3.1	2,445	2,486 (42)	137		2
Macaca mulatta	128	1.1	1,237	780 (519)	601		1,148
Salmo salar	128		1,172	755 (0)			10
Caenorhabditis elegans	128	7.1	1,065	1,065 (0)
Pinus pinaster	126		1,439	32 (0)
Cooperia oncophora	126		426	426 (96)			425
Oncorhynchus mykiss	128		449	400 (0)			304
Vitis vinifera	129		1,029	(0)			88
Oncorhynchus tshawytscha	126		681	(0)			52
Arabidopsis thaliana	128	7.1	301	301 (184)
Macaca fascicularis	128	1.1	153	114 (0)			153
Anopheles funestus	126		354	(0)
Ficedula albicollis	126		83	37 (15)			37
Oncorhynchus keta	127		212	(0)
Oncorhynchus nerka	127		118	(0)
Allium cepa	127		45	50 (0)
Ficedula hypoleuca	126		28	20 (10)			28
Agelaius phoeniceus	126		47	(0)
Oncorhynchus kisutch	127		40	(0)
Oreochromis niloticus	127		26	(0)
Bison bison	128	3.1	6	6 (2)	2		6
Hydroides elegans	126		8	7 (1)
Schistosoma mansoni	127		8	(0)			2
Gorilla gorilla	127		2	(0)
Total: 45 Organisms		15 genomes	124,324,007	56,790,621 (16,673,101)	19,343,598	1,545,094	806,450

See summary for past builds:

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Revised: May 25, 2006 1:38 PM .