RELEASE: NCBI dbSNP Build 129
dbSNP Component Availability Dates:
| Component | Date available |
|---|
|
| dbSNP web query for build 129: | Apr 14, 2008 | | ftp data for build 129: | Apr 17, 2008 | | Entrez Indexing for build 129: | Apr 17, 2008 | | BLAST database for build 129: | Apr 17, 2008 |
- The complete data for
build 129 are available at ftp://ftp.ncbi.nih.gov/snp/
in multiple formats.
- All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.
- Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.
New Submission since previous build:
| Organism | Current
Build | New Submissions
(ss#'s) | New RefSNP Clusters
(rs#'s) ( # validated) | New ss# with
Genotype | New ss# with
Frequency |
|---|
| Homo sapiens | 129 | 13,706,296 | 6,212,830 (0) | | 43,201 | | Mus musculus | 128 | 90 | 6,433,992 (0) | 55 | | | Pan troglodytes | 127 | 3 | 660 (1) | | | | Anopheles gambiae | 128 | 101 | (0) | | | | Danio rerio | 128 | | 3 (0) | | | | Plasmodium falciparum | 127 | 184,868 | 209,900 (0) | | | | Sus scrofa | 128 | 21 | (0) | | 1 | | Bos indicus x Bos taurus | 127 | | 100 (2) | | | | Macaca mulatta | 128 | 693 | 32 (30) | | | | Anopheles funestus | 126 | 354 | (0) | | | | Oncorhynchus tshawytscha | 126 | 68 | (0) | | | | Oncorhynchus mykiss | 127 | 15 | (0) | | | | Allium cepa | 127 | | 50 (0) | | | | Equus caballus | 128 | 11 | (0) | | | | Oreochromis niloticus | 127 | 6 | (0) | | | | Gorilla gorilla | 127 | 2 | (0) | | | | Total: 16 Organisms | | 13,892,528 | 12,857,567 (33) | 55 | 43,202 |
*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.
BUILD STATISTICS:
| Organism | dbSNP
Build | Genome
Build | Number of
Submissions
(ss#'s) | Number of
RefSNP Clusters
(rs#'s) ( # validated) | Number of
(rs#'s)
in gene | Number of
(ss#'s)
with
genotype | Number of
(ss#'s)
with
frequency |
|---|
| Homo sapiens | 129 | 36.3 | 50,529,995 | 18,045,964 (6,587,300) | 7,529,248 | | 781,879 | | Mus musculus | 128 | 37.1 | 18,645,060 | 14,380,528 (6,447,366) | 5,878,592 | 11,225,458 | | | Gallus gallus | 128 | 2.1 | 3,641,959 | 3,293,383 (3,280,002) | 1,452,147 | | | | Oryza sativa | 128 | 4.1 | 5,872,081 | 5,418,373 (22,057) | | | | | Canis familiaris | 126 | 2.1 | 3,526,996 | 3,301,322 (217,525) | 982,946 | | 17 | | Bos taurus | 128 | 3.1 | 2,233,086 | 2,223,033 (14,371) | 577,507 | 10,202 | 277 | | Pan troglodytes | 127 | | 1,544,900 | 1,543,217 (112,654) | | 1,544,895 | 2 | | Monodelphis domestica | 128 | 2.1 | 1,196,103 | 1,194,131 (0) | 287,496 | | | | Anopheles gambiae | 128 | 2.2 | 1,368,906 | 1,131,534 (0) | | | | | Apis mellifera | 128 | 4.1 | 1,118,192 | 1,117,049 (16) | 69,462 | | | | Danio rerio | 128 | 2.1 | 700,855 | 662,322 (3,091) | 305,414 | 2,298 | | | Plasmodium falciparum | 127 | | 185,071 | 210,103 (47) | | 199 | | | Felis catus | 127 | 1.1 | 327,037 | 327,037 (0) | | | | | Rattus norvegicus | 126 | 4.1 | 47,711 | 43,628 (1,605) | 18,881 | | | | Saccharum hybrid cultivar | 126 | | 42,853 | 42,853 (0) | | | | | Sus scrofa | 128 | 1.1 | 8,472 | 8,427 (24) | | | 1 | | Ovis aries | 128 | | 4,247 | 4,181 (66) | | | 35 | | Bos indicus x Bos taurus | 127 | 3.1 | 2,427 | 2,484 (42) | 1,990 | | 2 | | Macaca mulatta | 128 | 1.1 | 789 | 780 (519) | 601 | 29 | 724 | | Caenorhabditis elegans | 127 | | 1,065 | 1,065 (0) | | | | | Salmo salar | 128 | | 755 | 755 (0) | | | 10 | | Pinus pinaster | 126 | | 1,439 | 32 (0) | | | | | Cooperia oncophora | 126 | | 426 | 426 (96) | | | 425 | | Glycine max | 127 | | 281 | 278 (234) | | 281 | | | Arabidopsis thaliana | 127 | | 301 | 184 (184) | | 299 | | | Anopheles funestus | 126 | | 354 | (0) | | | | | Oncorhynchus tshawytscha | 126 | | 473 | (0) | | | 52 | | Zea mays | 128 | | 148 | 146 (80) | | 90 | | | Oncorhynchus mykiss | 127 | | 239 | (0) | | | 200 | | Macaca fascicularis | 128 | 1.1 | 114 | 114 (0) | | | 114 | | Oncorhynchus keta | 127 | | 174 | (0) | | | | | Allium cepa | 127 | | 45 | 50 (0) | | | | | Ficedula albicollis | 126 | | 37 | 37 (15) | | | 37 | | Oncorhynchus nerka | 127 | | 118 | (0) | | | | | Ficedula hypoleuca | 126 | | 28 | 20 (10) | | | 28 | | Equus caballus | 128 | 1.1 | 37 | 26 (0) | | | | | Agelaius phoeniceus | 126 | | 47 | (0) | | | | | Oncorhynchus kisutch | 127 | | 40 | (0) | | | | | Oreochromis niloticus | 127 | | 26 | (0) | | | | | Bison bison | 127 | 3.1 | 6 | 6 (2) | 6 | | 6 | | Hydroides elegans | 126 | | 8 | 7 (1) | | | | | Drosophila melanogaster | 127 | | 11 | (0) | | | | | Schistosoma mansoni | 127 | | 8 | (0) | | | 2 | | Gorilla gorilla | 127 | | 2 | (0) | | | | | Total: 44 Organisms | | 20
genomes | 91,002,922 | 52,953,495 (16,687,307) | 17,104,290 | 12,783,751 | 783,811 |
See summary for past builds:
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