Skip to main content
NCBI
 dbSNP
PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
transparent GIF
Spacer gif
BUILD 130
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Report in Submission Format 
SNP:  Handle|local_snp_id:   DEBNICK | tcrbeta.3.102112
  NCBI Assay Id(ss#):    ss458389
  Reference SNP Id(rs#): rs361326

Batch Detail:
Submitter Handle:           DEBNICK
Submitter Batch ID:         TCRBETA-SNPS-000616
Entry Date:                 Jul 03, 2000
Molecular type:             Genomic
No. of Chromosomes sampled: Not available-Origin Publication
Synonym defined:             
Organism:                   Homo sapiens
Population:                 Not submitted
Submitter Method ID:        METHOD-A
Comment:
   First numbers in SNP names indicates Genbank
   record: 1="U66059", 2="U66060", 3="U66061".
   Second number denotes  variant base position in
   Genbank record of given accession number.


  SubSNP Detail:
  NCBI Assay ID:       ss458389
  Submitter SNP ID:    tcrbeta.3.102112
  Synonyms:             
  LOCUSID:             Not submitted
  Submitter STS ID:    Not submitted
  STS Accession:       Not submitted
  GenBanK Accession:   L36092 U66061 
  Gene Name:           
  Length:              101
  Flanking Sequence Information:

  5' Assay:   TGGGAGTTGC TGGGTCTGGG GAGTTGGTGG CAACCCCTGT CCTACTATTT
  Observed:   C/T
  3' Assay:   GAGGTCTTTT ATACCAAGCT CTTTTCTCCT CTCCTCCTTG ATGGCCTGTT

Population Allele Frequency Batch:

POP Batch Id: TCRBETA-SNPS-000616

Submitter Handle:           DEBNICK
Submitter Method ID:        METHOD-A

   Handle|PopulationID:          DEBNICK|CORIELL-POPULATION-1
   No. of Chromosomes Sampled:   20

     Allele:          T=1/C=0 

   Handle|PopulationID:          DEBNICK|CORIELL-POPULATION-2
   No. of Chromosomes Sampled:   20

     Allele:          T=1/C=0 

   Handle|PopulationID:          DEBNICK|CORIELL-POPULATION-4
   No. of Chromosomes Sampled:   20

     Allele:          T=0.89/C=0.11 

   Handle|PopulationID:          DEBNICK|CORIELL-POPULATION-8
   No. of Chromosomes Sampled:   20

     Allele:          T=0.95/C=0.05 

Individual Genotype Batch:

Genotype Batch Id: AFFY_GENOTYPING_112103

Submitter Handle:           AFFY_GENOTYPING
Submitter Method ID:        PROTOCOL_CENTURION
Citation:
   1. 120K genotypes

   View citation details:[1] 

   Handle|PopulationID|IndividualID:  AFFY|AfAm|NA17101
   Allele:                            C/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|AfAm|NA17102
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|AfAm|NA17103
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|AfAm|NA17104
   Allele:                            C/C |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|AfAm|NA17105
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|AfAm|NA17106
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Asian|NA17011
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Asian|NA17012
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Asian|NA17013
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Asian|NA17014
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Asian|NA17015
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Asian|NA17016
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|CEPH|NA04477
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|CEPH|NA04479
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|CEPH|NA04846
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|CEPH|NA11036
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|CEPH|NA11038
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|CEPH|NA13056
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17201
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17202
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17203
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17204
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17205
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17206
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17207
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17208
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17210
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17211
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17212
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|Caucasian|NA17213
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD01
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD02
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD03
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD04
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD05
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD06
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD07
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD08
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD09
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD10
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD11
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD12
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD13
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD14
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD15
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD16
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD17
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD18
   Allele:                            C/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD19
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD20
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD21
   Allele:                            C/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD22
   Allele:                            T/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD23
   Allele:                            C/T |RS_STRAND_FWD

   Handle|PopulationID|IndividualID:  AFFY|PDpanel|PD24
   Allele:                            T/T |RS_STRAND_FWD

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .