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Reference SNP(refSNP) Cluster Report: rs9913317          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_020954.2:c.182C>T
NP_066005.2:p.Pro61Leu
NT_024871.11:g.650663C>T
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss43999929 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9913317 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13751432BCM_SSAHASNP|chr17.NT_024871.11_650663fwd/BC/Tgtgggcaggagctgaaggaggaagggggccgtgcttgttcccgggctcagacagttggca11/05/0311/22/03119Genomicunknown
ss17590965CSHL-HAPMAP|CSHL-HuCC-200402.chr17.NT_024871.11_650663fwd/BC/Tgtgggcaggagctgaaggaggaagggggccgtgcttgttcccgggctcagacagttggca02/19/0403/04/04120Genomicunknown
ss43999929ABI|hCV26010200byFreqfwd/BC/Tgtgggcaggagctgaaggaggaagggggccgtgcttgttcccgggctcagacagttggca07/18/0511/03/06126Genomicunknown
ss69203893PERLEGEN|PGP04770653byFreqfwd/BC/Tgtgggcaggagctgaaggaggaagggggccgtgcttgttcccgggctcagacagttggca01/30/0703/31/08127Genomicunknown
ss74899322ILLUMINA|ILMN_Human_1M_rs9913317fwd/BC/Tgtgggcaggagctgaaggaggaagggggccgtgcttgttcccgggctcagacagttggca08/28/0708/29/07129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9913317|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=129
 ATTCACCCCT TGTTGTGCTG AAACTGGGGT CCCTGGTTCC CTCCTACCCA CCTGGGAGCA
 GAACCCCTAC CCTGCTCATG TTAGCAGGCC CAATGCAGGA CCTCGGAGGG AGAACAGGGT
 GAATCTCTCC ATGCACTCGT GGGGAGGATT TCTGTTTTTC CTTCCTAACA CTCGCTTCTC
 TCTGAGATCT GACCCTTCCT TCATCTGCCG TTACAGATTC TGAGAACAAT AACTCCACAA
 TGGCGTCGGC CTCGGAGGGT GAAATGGAGT GTGGGCAGGA GCTGAAGGAG GAAGGGGGCC
 Y
 GTGCTTGTTC CCGGGCTCAG ACAGTTGGCA AGAAAACCCC GAGGAGCCCT GTTCCAAAGC
 CTCCTGGACC GTCCAAGAAG TGAGTGCACT GCCTCGGCTC CCCTCCGCCC CCGCTCACTC
 TGCCCAGGAA AATCTCACTG CACAGCTGCC CAGCTAGCCC CCGAAAATGC CACCATGGCC
 CAGCCCATTG AACCTGCCCA CAGGGCAGCA GCAGAGCTGC CCCTTCTGCA CCTGATTCAT
 CTCTGGCTGG AGTCTGTGGG TTCCAGACCC CCTGGGGCCT CCACCGTCTT TTTTTTTTTT

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NT_024871
dbSNP Blast Analysis
UniGene Cluster ID
514554

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source C/C
 C/T
 HWP C
 T
ss43999929 HapMap-CEU European 120 IG 1.000 1.000
HapMap-HCB Asian 88 IG 1.000 1.000
HapMap-JPT Asian 88 IG 0.886 0.114 0.752 0.943 0.057
HapMap-YRI Sub-Saharan African 120 IG 1.000 1.000
ss69203893 HapMap-CEU European 120 GF 1.000 0.500 0.500
HapMap-HCB Asian 90 GF 1.000 0.500 0.500
HapMap-JPT Asian 90 GF 1.000 0.500 0.500
HapMap-YRI Sub-Saharan African 120 GF 1.000 0.500 0.500
Concordant Genotype Total Sample C/C C/T
ss43999929 518 455 19
RefSNP Genotype Summary Total Individual C/C C/T
rs9913317 781 455 19
Discordant Genotypes:
Indiviudal
SampleID		 SubSNP(ss) Genotype Population
Handle		 Submitter
Population		 Submitter
SampleID		 SampleID
Alias		 Submission
Batch		 NCBI
ProbeID
150 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10846 CEPH1334.01 r27_ch17_CEU_illumina:human_1m_beadchip
151 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10847 CEPH1334.02 r27_ch17_CEU_illumina:human_1m_beadchip
157 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12144 CEPH1334.10 r27_ch17_CEU_illumina:human_1m_beadchip
158 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12145 CEPH1334.11 r27_ch17_CEU_illumina:human_1m_beadchip
159 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12146 CEPH1334.12 r27_ch17_CEU_illumina:human_1m_beadchip
160 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12239 CEPH1334.13 r27_ch17_CEU_illumina:human_1m_beadchip
161 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07029 CEPH1340.01 r27_ch17_CEU_illumina:human_1m_beadchip
162 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA07019 CEPH1340.02 r27_ch17_CEU_illumina:human_1m_beadchip
169 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA06994 CEPH1340.09 r27_ch17_CEU_illumina:human_1m_beadchip
170 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07000 CEPH1340.10 r27_ch17_CEU_illumina:human_1m_beadchip
171 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07022 CEPH1340.11 r27_ch17_CEU_illumina:human_1m_beadchip
172 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07056 CEPH1340.12 r27_ch17_CEU_illumina:human_1m_beadchip
174 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA07048 CEPH1341.01 r27_ch17_CEU_illumina:human_1m_beadchip
175 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA06991 CEPH1341.02 r27_ch17_CEU_illumina:human_1m_beadchip
184 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA07034 CEPH1341.11 r27_ch17_CEU_illumina:human_1m_beadchip
185 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07055 CEPH1341.12 r27_ch17_CEU_illumina:human_1m_beadchip
186 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA06993 CEPH1341.13 r27_ch17_CEU_illumina:human_1m_beadchip
187 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA06985 CEPH1341.14 r27_ch17_CEU_illumina:human_1m_beadchip
188 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA10851 CEPH1344.01 r27_ch17_CEU_illumina:human_1m_beadchip
199 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12056 CEPH1344.12 r27_ch17_CEU_illumina:human_1m_beadchip
200 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12057 CEPH1344.13 r27_ch17_CEU_illumina:human_1m_beadchip
203 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07348 CEPH1345.02 r27_ch17_CEU_illumina:human_1m_beadchip
213 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07357 CEPH1345.12 r27_ch17_CEU_illumina:human_1m_beadchip
214 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA07345 CEPH1345.13 r27_ch17_CEU_illumina:human_1m_beadchip
215 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA10857 CEPH1346.01 r27_ch17_CEU_illumina:human_1m_beadchip
225 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12043 CEPH1346.11 r27_ch17_CEU_illumina:human_1m_beadchip
226 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12044 CEPH1346.12 r27_ch17_CEU_illumina:human_1m_beadchip
229 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10859 CEPH1347.02 r27_ch17_CEU_illumina:human_1m_beadchip
238 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11881 CEPH1347.14 r27_ch17_CEU_illumina:human_1m_beadchip
239 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11882 CEPH1347.15 r27_ch17_CEU_illumina:human_1m_beadchip
242 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10854 CEPH1349.02 r27_ch17_CEU_illumina:human_1m_beadchip
252 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11839 CEPH1349.13 r27_ch17_CEU_illumina:human_1m_beadchip
253 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11840 CEPH1349.14 r27_ch17_CEU_illumina:human_1m_beadchip
254 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10856 CEPH1350.01 r27_ch17_CEU_illumina:human_1m_beadchip
255 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10855 CEPH1350.02 r27_ch17_CEU_illumina:human_1m_beadchip
262 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11829 CEPH1350.10 r27_ch17_CEU_illumina:human_1m_beadchip
263 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11830 CEPH1350.11 r27_ch17_CEU_illumina:human_1m_beadchip
264 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11831 CEPH1350.12 r27_ch17_CEU_illumina:human_1m_beadchip
265 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11832 CEPH1350.13 r27_ch17_CEU_illumina:human_1m_beadchip
335 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12707 CEPH1358.01 r27_ch17_CEU_illumina:human_1m_beadchip
344 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12716 CEPH1358.11 r27_ch17_CEU_illumina:human_1m_beadchip
345 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA12717 CEPH1358.12 r27_ch17_CEU_illumina:human_1m_beadchip
348 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA10860 CEPH1362.01 r27_ch17_CEU_illumina:human_1m_beadchip
349 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10861 CEPH1362.02 r27_ch17_CEU_illumina:human_1m_beadchip
360 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11992 CEPH1362.13 r27_ch17_CEU_illumina:human_1m_beadchip
361 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11993 CEPH1362.14 r27_ch17_CEU_illumina:human_1m_beadchip
362 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11994 CEPH1362.15 r27_ch17_CEU_illumina:human_1m_beadchip
363 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA11995 CEPH1362.16 r27_ch17_CEU_illumina:human_1m_beadchip
366 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10863 CEPH1375.02 r27_ch17_CEU_illumina:human_1m_beadchip
373 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12264 CEPH1375.11 r27_ch17_CEU_illumina:human_1m_beadchip
374 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12234 CEPH1375.12 r27_ch17_CEU_illumina:human_1m_beadchip
399 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10830 CEPH1408.01 r27_ch17_CEU_illumina:human_1m_beadchip
400 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10831 CEPH1408.02 r27_ch17_CEU_illumina:human_1m_beadchip
408 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12154 CEPH1408.10 r27_ch17_CEU_illumina:human_1m_beadchip
409 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA12236 CEPH1408.11 r27_ch17_CEU_illumina:human_1m_beadchip
410 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12155 CEPH1408.12 r27_ch17_CEU_illumina:human_1m_beadchip
411 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12156 CEPH1408.13 r27_ch17_CEU_illumina:human_1m_beadchip
429 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10835 CEPH1416.01 r27_ch17_CEU_illumina:human_1m_beadchip
438 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12248 CEPH1416.11 r27_ch17_CEU_illumina:human_1m_beadchip
439 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12249 CEPH1416.12 r27_ch17_CEU_illumina:human_1m_beadchip
456 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10838 CEPH1420.01 r27_ch17_CEU_illumina:human_1m_beadchip
457 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA10839 CEPH1420.02 r27_ch17_CEU_illumina:human_1m_beadchip
464 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12003 CEPH1420.09 r27_ch17_CEU_illumina:human_1m_beadchip
465 ss43999929 N/N CSHL-HAPMAP HapMap-CEU NA12004 CEPH1420.10 r27_ch17_CEU_illumina:human_1m_beadchip
466 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12005 CEPH1420.11 r27_ch17_CEU_illumina:human_1m_beadchip
467 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12006 CEPH1420.12 r27_ch17_CEU_illumina:human_1m_beadchip
524 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12740 CEPH1444.02 r27_ch17_CEU_illumina:human_1m_beadchip
535 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12750 CEPH1444.13 r27_ch17_CEU_illumina:human_1m_beadchip
536 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12751 CEPH1444.14 r27_ch17_CEU_illumina:human_1m_beadchip
537 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12752 CEPH1447.01 r27_ch17_CEU_illumina:human_1m_beadchip
538 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12753 CEPH1447.02 r27_ch17_CEU_illumina:human_1m_beadchip
545 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12760 CEPH1447.09 r27_ch17_CEU_illumina:human_1m_beadchip
546 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12761 CEPH1447.10 r27_ch17_CEU_illumina:human_1m_beadchip
547 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12762 CEPH1447.11 r27_ch17_CEU_illumina:human_1m_beadchip
548 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12763 CEPH1447.12 r27_ch17_CEU_illumina:human_1m_beadchip
565 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12801 CEPH1454.01 r27_ch17_CEU_illumina:human_1m_beadchip
566 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12802 CEPH1454.02 r27_ch17_CEU_illumina:human_1m_beadchip
576 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12812 CEPH1454.12 r27_ch17_CEU_illumina:human_1m_beadchip
577 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12813 CEPH1454.13 r27_ch17_CEU_illumina:human_1m_beadchip
578 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12814 CEPH1454.14 r27_ch17_CEU_illumina:human_1m_beadchip
579 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12815 CEPH1454.15 r27_ch17_CEU_illumina:human_1m_beadchip
610 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12864 CEPH1459.01 r27_ch17_CEU_illumina:human_1m_beadchip
611 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12865 CEPH1459.02 r27_ch17_CEU_illumina:human_1m_beadchip
618 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12872 CEPH1459.09 r27_ch17_CEU_illumina:human_1m_beadchip
619 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12873 CEPH1459.10 r27_ch17_CEU_illumina:human_1m_beadchip
620 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12874 CEPH1459.11 r27_ch17_CEU_illumina:human_1m_beadchip
621 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12875 CEPH1459.12 r27_ch17_CEU_illumina:human_1m_beadchip
623 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12878 CEPH1463.02 r27_ch17_CEU_illumina:human_1m_beadchip
636 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12891 CEPH1463.15 r27_ch17_CEU_illumina:human_1m_beadchip
637 ss43999929 C/C CSHL-HAPMAP HapMap-CEU NA12892 CEPH1463.16 r27_ch17_CEU_illumina:human_1m_beadchip
5132 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18500 YOR004.01 r27_ch17_YRI_illumina:human_1m_beadchip
5133 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18502 YOR004.02 r27_ch17_YRI_illumina:human_1m_beadchip
5134 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19127 YOR077.02 r27_ch17_YRI_illumina:human_1m_beadchip
5135 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19128 YOR077.03 r27_ch17_YRI_illumina:human_1m_beadchip
5136 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19132 YOR101.01 r27_ch17_YRI_illumina:human_1m_beadchip
5137 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19131 YOR101.02 r27_ch17_YRI_illumina:human_1m_beadchip
5138 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19130 YOR101.03 r27_ch17_YRI_illumina:human_1m_beadchip
5139 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA19100 YOR105.01 r27_ch17_YRI_illumina:human_1m_beadchip
5140 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19099 YOR105.02 r27_ch17_YRI_illumina:human_1m_beadchip
5141 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19098 YOR105.03 r27_ch17_YRI_illumina:human_1m_beadchip
5142 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19194 YOR112.01 r27_ch17_YRI_illumina:human_1m_beadchip
5143 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19193 YOR112.02 r27_ch17_YRI_illumina:human_1m_beadchip
5144 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19192 YOR112.03 r27_ch17_YRI_illumina:human_1m_beadchip
5145 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19240 YOR117.01 r27_ch17_YRI_illumina:human_1m_beadchip
5146 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19238 YOR117.02 r27_ch17_YRI_illumina:human_1m_beadchip
5147 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19239 YOR117.03 r27_ch17_YRI_illumina:human_1m_beadchip
5148 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18526 CH18526 r27_ch17_CHB_imsut-riken:genotyping
5149 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18524 CH18524 r27_ch17_CHB_imsut-riken:genotyping
5150 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18529 CH18529 r27_ch17_CHB_imsut-riken:genotyping
5151 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18558 CH18558 r27_ch17_CHB_imsut-riken:genotyping
5152 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18532 CH18532 r27_ch17_CHB_imsut-riken:genotyping
5153 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18561 CH18561 r27_ch17_CHB_imsut-riken:genotyping
5154 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18562 CH18562 r27_ch17_CHB_imsut-riken:genotyping
5155 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18537 CH18537 r27_ch17_CHB_imsut-riken:genotyping
5156 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18603 CH18603 r27_ch17_CHB_imsut-riken:genotyping
5157 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18540 CH18540 r27_ch17_CHB_imsut-riken:genotyping
5158 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18605 CH18605 r27_ch17_CHB_imsut-riken:genotyping
5159 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18542 CH18542 r27_ch17_CHB_imsut-riken:genotyping
5160 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18545 CH18545 r27_ch17_CHB_imsut-riken:genotyping
5161 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18572 CH18572 r27_ch17_CHB_imsut-riken:genotyping
5162 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18547 CH18547 r27_ch17_CHB_imsut-riken:genotyping
5163 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18609 CH18609 r27_ch17_CHB_imsut-riken:genotyping
5164 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18550 CH18550 r27_ch17_CHB_imsut-riken:genotyping
5165 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18608 CH18608 r27_ch17_CHB_imsut-riken:genotyping
5166 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18552 CH18552 r27_ch17_CHB_imsut-riken:genotyping
5168 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18555 CH18555 r27_ch17_CHB_imsut-riken:genotyping
5169 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18564 CH18564 r27_ch17_CHB_imsut-riken:genotyping
5170 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18566 CH18566 r27_ch17_CHB_imsut-riken:genotyping
5171 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18563 CH18563 r27_ch17_CHB_imsut-riken:genotyping
5172 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18570 CH18570 r27_ch17_CHB_imsut-riken:genotyping
5173 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18612 CH18612 r27_ch17_CHB_imsut-riken:genotyping
5174 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18571 CH18571 r27_ch17_CHB_imsut-riken:genotyping
5175 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18620 CH18620 r27_ch17_CHB_imsut-riken:genotyping
5176 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18621 CH18621 r27_ch17_CHB_imsut-riken:genotyping
5177 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18594 CH18594 r27_ch17_CHB_imsut-riken:genotyping
5178 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18622 CH18622 r27_ch17_CHB_imsut-riken:genotyping
5179 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18573 CH18573 r27_ch17_CHB_imsut-riken:genotyping
5180 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18623 CH18623 r27_ch17_CHB_imsut-riken:genotyping
5181 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18576 CH18576 r27_ch17_CHB_imsut-riken:genotyping
5182 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18577 CH18577 r27_ch17_CHB_imsut-riken:genotyping
5183 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18624 CH18624 r27_ch17_CHB_imsut-riken:genotyping
5184 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18579 CH18579 r27_ch17_CHB_imsut-riken:genotyping
5185 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18632 CH18632 r27_ch17_CHB_imsut-riken:genotyping
5186 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18582 CH18582 r27_ch17_CHB_imsut-riken:genotyping
5187 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18633 CH18633 r27_ch17_CHB_imsut-riken:genotyping
5188 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18635 CH18635 r27_ch17_CHB_imsut-riken:genotyping
5189 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18592 CH18592 r27_ch17_CHB_imsut-riken:genotyping
5190 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18636 CH18636 r27_ch17_CHB_imsut-riken:genotyping
5191 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18593 CH18593 r27_ch17_CHB_imsut-riken:genotyping
5192 ss43999929 C/C CSHL-HAPMAP HapMap-HCB NA18637 CH18637 r27_ch17_CHB_imsut-riken:genotyping
5193 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18942 JA18942 r27_ch17_JPT_illumina:human_1m_beadchip
5194 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18940 JA18940 r27_ch17_JPT_illumina:human_1m_beadchip
5195 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18951 JA18951 r27_ch17_JPT_illumina:human_1m_beadchip
5196 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18943 JA18943 r27_ch17_JPT_illumina:human_1m_beadchip
5197 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18947 JA18947 r27_ch17_JPT_illumina:human_1m_beadchip
5198 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18944 JA18944 r27_ch17_JPT_illumina:human_1m_beadchip
5199 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18945 JA18945 r27_ch17_JPT_illumina:human_1m_beadchip
5200 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18949 JA18949 r27_ch17_JPT_illumina:human_1m_beadchip
5201 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18948 JA18948 r27_ch17_JPT_illumina:human_1m_beadchip
5202 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18952 JA18952 r27_ch17_JPT_illumina:human_1m_beadchip
5203 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18956 JA18956 r27_ch17_JPT_illumina:human_1m_beadchip
5204 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18964 JA18964 r27_ch17_JPT_illumina:human_1m_beadchip
5205 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18953 JA18953 r27_ch17_JPT_illumina:human_1m_beadchip
5206 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18968 JA18968 r27_ch17_JPT_illumina:human_1m_beadchip
5207 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18959 JA18959 r27_ch17_JPT_illumina:human_1m_beadchip
5208 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18969 JA18969 r27_ch17_JPT_illumina:human_1m_beadchip
5209 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18960 JA18960 r27_ch17_JPT_illumina:human_1m_beadchip
5211 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18972 JA18972 r27_ch17_JPT_illumina:human_1m_beadchip
5212 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18965 JA18965 r27_ch17_JPT_illumina:human_1m_beadchip
5213 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18973 JA18973 r27_ch17_JPT_illumina:human_1m_beadchip
5214 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18966 JA18966 r27_ch17_JPT_illumina:human_1m_beadchip
5215 ss43999929 C/T CSHL-HAPMAP HapMap-JPT NA18975 JA18975 r27_ch17_JPT_illumina:human_1m_beadchip
5216 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18967 JA18967 r27_ch17_JPT_illumina:human_1m_beadchip
5217 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18976 JA18976 r27_ch17_JPT_illumina:human_1m_beadchip
5218 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18978 JA18978 r27_ch17_JPT_illumina:human_1m_beadchip
5220 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18980 JA18980 r27_ch17_JPT_illumina:human_1m_beadchip
5222 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18981 JA18981 r27_ch17_JPT_illumina:human_1m_beadchip
5223 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18971 JA18971 r27_ch17_JPT_illumina:human_1m_beadchip
5224 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18974 JA18974 r27_ch17_JPT_illumina:human_1m_beadchip
5226 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18990 JA18990 r27_ch17_JPT_illumina:human_1m_beadchip
5227 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18991 JA18991 r27_ch17_JPT_illumina:human_1m_beadchip
5228 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18994 JA18994 r27_ch17_JPT_illumina:human_1m_beadchip
5229 ss43999929 N/N CSHL-HAPMAP HapMap-JPT NA18992 JA18992 r27_ch17_JPT_illumina:human_1m_beadchip
5231 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18998 JA18998 r27_ch17_JPT_illumina:human_1m_beadchip
5232 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA19000 JA19000 r27_ch17_JPT_illumina:human_1m_beadchip
5233 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA19005 JA19005 r27_ch17_JPT_illumina:human_1m_beadchip
5234 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA18999 JA18999 r27_ch17_JPT_illumina:human_1m_beadchip
5235 ss43999929 C/C CSHL-HAPMAP HapMap-JPT NA19007 JA19007 r27_ch17_JPT_illumina:human_1m_beadchip
5236 ss43999929 N/N CSHL-HAPMAP HapMap-JPT NA19003 JA19003 r27_ch17_JPT_illumina:human_1m_beadchip
5237 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18501 YOR004.03 r27_ch17_YRI_illumina:human_1m_beadchip
5238 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18503 YOR005.01 r27_ch17_YRI_illumina:human_1m_beadchip
5239 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18505 YOR005.02 r27_ch17_YRI_illumina:human_1m_beadchip
5240 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18504 YOR005.03 r27_ch17_YRI_illumina:human_1m_beadchip
5241 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18506 YOR009.01 r27_ch17_YRI_illumina:human_1m_beadchip
5242 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18508 YOR009.02 r27_ch17_YRI_illumina:human_1m_beadchip
5243 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18507 YOR009.03 r27_ch17_YRI_illumina:human_1m_beadchip
5244 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18860 YOR012.01 r27_ch17_YRI_illumina:human_1m_beadchip
5245 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18858 YOR012.02 r27_ch17_YRI_illumina:human_1m_beadchip
5246 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18859 YOR012.03 r27_ch17_YRI_illumina:human_1m_beadchip
5247 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18515 YOR013.01 r27_ch17_YRI_illumina:human_1m_beadchip
5248 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18517 YOR013.02 r27_ch17_YRI_illumina:human_1m_beadchip
5249 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18516 YOR013.03 r27_ch17_YRI_illumina:human_1m_beadchip
5250 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18521 YOR016.01 r27_ch17_YRI_illumina:human_1m_beadchip
5251 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18523 YOR016.02 r27_ch17_YRI_illumina:human_1m_beadchip
5252 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18522 YOR016.03 r27_ch17_YRI_illumina:human_1m_beadchip
5253 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18872 YOR017.01 r27_ch17_YRI_illumina:human_1m_beadchip
5254 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18870 YOR017.02 r27_ch17_YRI_illumina:human_1m_beadchip
5255 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18871 YOR017.03 r27_ch17_YRI_illumina:human_1m_beadchip
5256 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18854 YOR018.01 r27_ch17_YRI_illumina:human_1m_beadchip
5257 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18852 YOR018.02 r27_ch17_YRI_illumina:human_1m_beadchip
5258 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18853 YOR018.03 r27_ch17_YRI_illumina:human_1m_beadchip
5259 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18857 YOR023.01 r27_ch17_YRI_illumina:human_1m_beadchip
5260 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18855 YOR023.02 r27_ch17_YRI_illumina:human_1m_beadchip
5261 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA18856 YOR023.03 r27_ch17_YRI_illumina:human_1m_beadchip
5262 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18863 YOR024.01 r27_ch17_YRI_illumina:human_1m_beadchip
5263 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18861 YOR024.02 r27_ch17_YRI_illumina:human_1m_beadchip
5264 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18862 YOR024.03 r27_ch17_YRI_illumina:human_1m_beadchip
5265 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18914 YOR028.01 r27_ch17_YRI_illumina:human_1m_beadchip
5266 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18912 YOR028.02 r27_ch17_YRI_illumina:human_1m_beadchip
5267 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA18913 YOR028.03 r27_ch17_YRI_illumina:human_1m_beadchip
5268 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19094 YOR040.01 r27_ch17_YRI_illumina:human_1m_beadchip
5269 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19093 YOR040.02 r27_ch17_YRI_illumina:human_1m_beadchip
5270 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA19092 YOR040.03 r27_ch17_YRI_illumina:human_1m_beadchip
5271 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19103 YOR042.01 r27_ch17_YRI_illumina:human_1m_beadchip
5272 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19102 YOR042.02 r27_ch17_YRI_illumina:human_1m_beadchip
5273 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19101 YOR042.03 r27_ch17_YRI_illumina:human_1m_beadchip
5274 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19139 YOR043.01 r27_ch17_YRI_illumina:human_1m_beadchip
5275 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19137 YOR043.02 r27_ch17_YRI_illumina:human_1m_beadchip
5276 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19138 YOR043.03 r27_ch17_YRI_illumina:human_1m_beadchip
5277 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19202 YOR045.01 r27_ch17_YRI_illumina:human_1m_beadchip
5278 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19201 YOR045.02 r27_ch17_YRI_illumina:human_1m_beadchip
5279 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19200 YOR045.03 r27_ch17_YRI_illumina:human_1m_beadchip
5280 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19173 YOR047.01 r27_ch17_YRI_illumina:human_1m_beadchip
5281 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19172 YOR047.02 r27_ch17_YRI_illumina:human_1m_beadchip
5282 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19171 YOR047.03 r27_ch17_YRI_illumina:human_1m_beadchip
5283 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA19205 YOR048.01 r27_ch17_YRI_illumina:human_1m_beadchip
5284 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19204 YOR048.02 r27_ch17_YRI_illumina:human_1m_beadchip
5285 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19203 YOR048.03 r27_ch17_YRI_illumina:human_1m_beadchip
5286 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19211 YOR050.01 r27_ch17_YRI_illumina:human_1m_beadchip
5287 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19209 YOR050.02 r27_ch17_YRI_illumina:human_1m_beadchip
5288 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19210 YOR050.03 r27_ch17_YRI_illumina:human_1m_beadchip
5289 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19208 YOR051.01 r27_ch17_YRI_illumina:human_1m_beadchip
5290 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19206 YOR051.02 r27_ch17_YRI_illumina:human_1m_beadchip
5291 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19207 YOR051.03 r27_ch17_YRI_illumina:human_1m_beadchip
5292 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19161 YOR056.01 r27_ch17_YRI_illumina:human_1m_beadchip
5293 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19159 YOR056.02 r27_ch17_YRI_illumina:human_1m_beadchip
5294 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19160 YOR056.03 r27_ch17_YRI_illumina:human_1m_beadchip
5295 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19221 YOR058.01 r27_ch17_YRI_illumina:human_1m_beadchip
5296 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19222 YOR058.02 r27_ch17_YRI_illumina:human_1m_beadchip
5297 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19223 YOR058.03 r27_ch17_YRI_illumina:human_1m_beadchip
5298 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19120 YOR060.01 r27_ch17_YRI_illumina:human_1m_beadchip
5299 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19116 YOR060.02 r27_ch17_YRI_illumina:human_1m_beadchip
5300 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19119 YOR060.03 r27_ch17_YRI_illumina:human_1m_beadchip
5301 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19142 YOR071.01 r27_ch17_YRI_illumina:human_1m_beadchip
5302 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19140 YOR071.02 r27_ch17_YRI_illumina:human_1m_beadchip
5303 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19141 YOR071.03 r27_ch17_YRI_illumina:human_1m_beadchip
5304 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19154 YOR072.01 r27_ch17_YRI_illumina:human_1m_beadchip
5305 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19152 YOR072.02 r27_ch17_YRI_illumina:human_1m_beadchip
5306 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19153 YOR072.03 r27_ch17_YRI_illumina:human_1m_beadchip
5307 ss43999929 N/N CSHL-HAPMAP HapMap-YRI NA19145 YOR074.01 r27_ch17_YRI_illumina:human_1m_beadchip
5308 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19143 YOR074.02 r27_ch17_YRI_illumina:human_1m_beadchip
5309 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19144 YOR074.03 r27_ch17_YRI_illumina:human_1m_beadchip
5310 ss43999929 C/C CSHL-HAPMAP HapMap-YRI NA19129 YOR077.01 r27_ch17_YRI_illumina:human_1m_beadchip
Genotype data submitted for781 samples from781 individualsIndividual with multiple genotypes submission:0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP
 UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .