Reference SNP(refSNP) Cluster Report: rs870849

Reference SNP(refSNP) Cluster Report: rs870849

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	86/130
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_002286.4:c.1364C>T
NM_002286.5:c.1364T>C
NP_002277.4:p.Ile455Thr
NT_009759.15:g.6741281T>C

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss1293768 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs870849 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss1293768	TSC-CSHL\|TSC0138680	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	09/06/00	05/16/04	86	Genomic	95 %
ss1522632	LEE\|344537	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	09/13/00	10/10/03	92	cDNA	unknown
ss4320946	CGAP-GAI\|238975	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	11/28/01	10/10/03	102	cDNA	unknown
ss4394092	LEE\|ge344537	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	04/25/02	10/10/03	106	cDNA	unknown
ss4413923	LEE\|e344537	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	04/26/02	10/10/03	106	cDNA	unknown
ss5713215	SC_JCM\|NT_009731.12_799470	rev/T	A/G	accaaaaggagcagagaaaggacaccaagg	tgagaaacagcaggaggtggcctgctggga	01/10/03	10/10/03	111	Genomic	unknown
ss15517112	SC_SNP\|NT_009759.15_6741281	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	11/14/03	11/22/03	120	Genomic	unknown
ss38901055	ABI\|hCV9797874	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	07/16/05	07/16/05	126	Genomic	unknown
ss46551659	PERLEGEN\|PS02009652	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	08/01/05	08/01/05	126	Genomic	unknown
ss65729896	ILLUMINA\|Human1-rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	10/10/06	10/10/06	127	Genomic	unknown
ss66629014	ILLUMINA\|HumanHap300v1.1_rs870849	fwd/T	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	11/09/06	11/09/06	127	Genomic	unknown
ss67883584	ILLUMINA\|HumanHap550v1.1_rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	11/14/06	11/14/06	127	Genomic	unknown
ss68023479	ILLUMINA\|HumanHap650Yv1.0_rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	11/14/06	11/15/06	127	Genomic	unknown
ss69099846	PERLEGEN\|PGP02009652	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	01/30/07	08/14/07	127	Genomic	unknown
ss70976426	ILLUMINA\|HumanHap550v3.0__rs870849	rev/T	A/G	accaaaaggagcagagaaaggacaccaagg	tgagaaacagcaggaggtggcctgctggga	04/20/07	03/31/08	130	Genomic	unknown
ss71588108	ILLUMINA\|HumanHap650Yv3.0_rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	04/23/07	04/23/07	127	Genomic	unknown
ss75434449	ILLUMINA\|ILMN_Human_1M_rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	08/28/07	08/29/07	129	Genomic	unknown
ss79285255	ILLUMINA\|HumanHap300v2.0_rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	04/18/07	11/18/07	130	Genomic	unknown
ss82834438	HGSV\|Cor19240_SNV_20070510.chr12_6757281	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	11/30/07	12/03/07	130	Genomic	unknown
ss83585581	KRIBB_YJKIM\|KHS495862	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	12/04/07	12/05/07	130	Genomic	unknown
ss86273059	CORNELL\|hCV9797874	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	01/21/08	01/21/08	129	Genomic	unknown
ss97283591	HUMANGENOME_JCVI\|1103649356971	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	03/28/08	03/28/08	130	Genomic	unknown
ss106784452	BGI\|BGI_rs870849	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	09/16/08	09/18/08	130	Genomic	unknown
ss111430752	1000GENOMES\|CEU.trio.12.15.2008_2670290_chr12_6757281	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	12/15/08	12/17/08	130	Genomic	unknown
ss113120468	1000GENOMES\|NA19240_2008_12_16_2406297_chr12_6757281	fwd/B	C/T	tcccagcaggccacctcctgctgtttctca	ccttggtgtcctttctctgctccttttggt	12/18/08	12/18/08	130	Genomic	unknown

Fasta sequence (Legend)

 AAGACCCTGG GTACAGTCCC TTAAACTCTC TGGATCTCAT TGCATCTGTA AAGTCTGAGA
 GAATGACAAA GTGTCCTTTC TAGTCCTGAC CCTATGCCTC ATCCTGTACT TTCTCCATAG
 GTGCCCAACG CTCTGGGAGA GCCCCAGGTG CCCTCCCAGC AGGCCACCTC CTGCTGTTTC
 TCA
 Y
 CCTTGGTGTC CTTTCTCTGC TCCTTTTGGT GACTGGAGCC TTTGGCTTTC ACCTTTGGAG
 AAGACAGGTG AGCCAGGGAC ATGGCAACCC CGCCCCCCAG CAGCTCCCGC TCTTCCATCC
 TCAGAGTGCT GATGGCACCC CTTCCTCAGG AAGGTGACCA AATGGGACCC TGAACTTGCC
 CTCAGAGCCC CCCTTCTTCA TAAGCCTCTC ACTCCAGGGA TGGCTTGTGC CTGGGTAGGC
 TGGAAGGGGG GTTGGGAGAA AGCCAGGACC AGATGGGGAG GGCAGGGGCG CTGAGAAAAA
 ATAGAGGGAC TCAGTGTCcc tcctcatccg cttcccttca tccttctcct ccttccgccc
 tccgtctctc tctccatctc ttcTCACAGT GGCGACCAAG ACGATTTTCT GCCTTAGAGC
 AAGGGATTCA CCCTCCGCAG CTCAGAGCAA GATAGAGGAG CTGGAGCAAG AACCGGAGCC
 GGAGCCGAGC CCGGAACCGG AGCCCGAGCC CGACCCGAGC CCGGAACAGC TTTGACCTGG
 AGCTGAGGCA GCCAGCAGAT CTCAGCAGCC CAGTCCAAAT AAACTCCCTG TCAGCAGCAA
 GCCTGAGTCT GGCTTTTTCT TGGCCAGTGG AGGGTTCCCG TCTCTCCCCA G

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
dbSTS	GenBank
CGAP-C-23897	NT_009759 ABBA01017655 AC006087.12 Hs.74011

dbSNP Blast Analysis

UniGene Cluster ID
409523

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss1293768	CEPH		184	AF					0.520	0.480

	HapMap-CEU	European	120	IG	0.300	0.583	0.117	0.150	0.592	0.408

	HapMap-HCB	Asian	90	IG	0.511	0.444	0.044	0.371	0.733	0.267

	HapMap-JPT	Asian	88	IG	0.477	0.523		0.020	0.739	0.261

	HapMap-YRI	Sub-Saharan African	120	IG	0.367	0.467	0.167	1.000	0.600	0.400

ss69099846	HapMap-CEU	European	120	GF		1.000			0.500	0.500

	HapMap-HCB	Asian	90	GF		1.000			0.500	0.500

	HapMap-JPT	Asian	90	GF		1.000			0.500	0.500

	HapMap-YRI	Sub-Saharan African	120	GF		1.000			0.500	0.500

Concordant Genotype	Total Sample	C/C	C/T	T/T
ss1293768	1080	407	528	131
ss97283591	1		1

RefSNP Genotype Summary	Total Individual	C/C	C/T	T/T
rs870849	1208	407	529	131

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
150	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA10846	CEPH1334.01	r27_ch12_CEU_illumina:human_1m_beadchip	802070
159	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
161	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA07029	CEPH1340.01	r27_ch12_CEU_illumina:human_1m_beadchip	802070
169	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA06994	CEPH1340.09	r27_ch12_CEU_illumina:human_1m_beadchip	802070
170	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA07000	CEPH1340.10	r27_ch12_CEU_illumina:human_1m_beadchip	802070
172	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA07056	CEPH1340.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
184	ss1293768	N/N	CSHL-HAPMAP	HapMap-CEU	NA07034	CEPH1341.11	r27_ch12_CEU_illumina:human_1m_beadchip	802070
187	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	r27_ch12_CEU_illumina:human_1m_beadchip	802070
238	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA11881	CEPH1347.14	r27_ch12_CEU_illumina:human_1m_beadchip	802070
239	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA11882	CEPH1347.15	r27_ch12_CEU_illumina:human_1m_beadchip	802070
242	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	r27_ch12_CEU_illumina:human_1m_beadchip	802070
253	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA11840	CEPH1349.14	r27_ch12_CEU_illumina:human_1m_beadchip	802070
255	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	r27_ch12_CEU_illumina:human_1m_beadchip	802070
262	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA11829	CEPH1350.10	r27_ch12_CEU_illumina:human_1m_beadchip	802070
263	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA11830	CEPH1350.11	r27_ch12_CEU_illumina:human_1m_beadchip	802070
264	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA11831	CEPH1350.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
345	ss1293768	N/N	CSHL-HAPMAP	HapMap-CEU	NA12717	CEPH1358.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
348	ss1293768	N/N	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r27_ch12_CEU_illumina:human_1m_beadchip	802070
349	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA10861	CEPH1362.02	r27_ch12_CEU_illumina:human_1m_beadchip	802070
361	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA11993	CEPH1362.14	r27_ch12_CEU_illumina:human_1m_beadchip	802070
366	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	r27_ch12_CEU_illumina:human_1m_beadchip	802070
374	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12234	CEPH1375.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
408	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12154	CEPH1408.10	r27_ch12_CEU_illumina:human_1m_beadchip	802070
439	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA12249	CEPH1416.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
456	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA10838	CEPH1420.01	r27_ch12_CEU_illumina:human_1m_beadchip	802070
464	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	r27_ch12_CEU_illumina:human_1m_beadchip	802070
465	ss1293768	N/N	CSHL-HAPMAP	HapMap-CEU	NA12004	CEPH1420.10	r27_ch12_CEU_illumina:human_1m_beadchip	802070
536	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12751	CEPH1444.14	r27_ch12_CEU_illumina:human_1m_beadchip	802070
538	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12753	CEPH1447.02	r27_ch12_CEU_illumina:human_1m_beadchip	802070
545	ss1293768	T/T	CSHL-HAPMAP	HapMap-CEU	NA12760	CEPH1447.09	r27_ch12_CEU_illumina:human_1m_beadchip	802070
546	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12761	CEPH1447.10	r27_ch12_CEU_illumina:human_1m_beadchip	802070
618	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	r27_ch12_CEU_illumina:human_1m_beadchip	802070
621	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12875	CEPH1459.12	r27_ch12_CEU_illumina:human_1m_beadchip	802070
637	ss1293768	C/C	CSHL-HAPMAP	HapMap-CEU	NA12892	CEPH1463.16	r27_ch12_CEU_illumina:human_1m_beadchip	802070
5132	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18500	YOR004.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5133	ss1293768	N/N	CSHL-HAPMAP	HapMap-YRI	NA18502	YOR004.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5134	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19127	YOR077.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5137	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5141	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19098	YOR105.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5142	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19194	YOR112.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5143	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19193	YOR112.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5145	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19240	YOR117.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5146	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19238	YOR117.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5147	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19239	YOR117.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5148	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5151	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18558	CH18558	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5152	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18532	CH18532	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5153	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18561	CH18561	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5154	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18562	CH18562	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5156	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18603	CH18603	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5161	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18572	CH18572	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5162	ss1293768	N/N	CSHL-HAPMAP	HapMap-HCB	NA18547	CH18547	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5166	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18552	CH18552	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5168	ss1293768	T/T	CSHL-HAPMAP	HapMap-HCB	NA18555	CH18555	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5169	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5170	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18566	CH18566	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5171	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5177	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18594	CH18594	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5178	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18622	CH18622	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5180	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18623	CH18623	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5181	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18576	CH18576	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5182	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5184	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18579	CH18579	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5185	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18632	CH18632	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5186	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5188	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18635	CH18635	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5189	ss1293768	T/T	CSHL-HAPMAP	HapMap-HCB	NA18592	CH18592	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5191	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5192	ss1293768	C/C	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	r27_ch12_CHB_illumina:human_1m_beadchip	802070
5194	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18940	JA18940	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5198	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18944	JA18944	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5201	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5203	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18956	JA18956	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5205	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18953	JA18953	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5206	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18968	JA18968	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5211	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18972	JA18972	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5212	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5214	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18966	JA18966	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5216	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18967	JA18967	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5217	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5218	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18978	JA18978	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5219	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18970	JA18970	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5220	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5224	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18974	JA18974	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5225	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5226	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5229	ss1293768	N/N	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5231	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5232	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5234	ss1293768	C/C	CSHL-HAPMAP	HapMap-JPT	NA18999	JA18999	r27_ch12_JPT_illumina:human_1m_beadchip	802070
5237	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18501	YOR004.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5238	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18503	YOR005.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5239	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18505	YOR005.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5240	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5241	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA18506	YOR009.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5243	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA18507	YOR009.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5248	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5250	ss1293768	N/N	CSHL-HAPMAP	HapMap-YRI	NA18521	YOR016.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5251	ss1293768	N/N	CSHL-HAPMAP	HapMap-YRI	NA18523	YOR016.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5252	ss1293768	N/N	CSHL-HAPMAP	HapMap-YRI	NA18522	YOR016.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5254	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA18870	YOR017.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5256	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5257	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5262	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18863	YOR024.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5263	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18861	YOR024.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5265	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18914	YOR028.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5266	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5267	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5272	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19102	YOR042.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5273	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19101	YOR042.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5280	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19173	YOR047.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5281	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19172	YOR047.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5284	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19204	YOR048.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5286	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5287	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19209	YOR050.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5288	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19210	YOR050.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5289	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19208	YOR051.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5290	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19206	YOR051.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5291	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19207	YOR051.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5297	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19223	YOR058.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5298	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19120	YOR060.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5299	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19116	YOR060.02	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5300	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19119	YOR060.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5301	ss1293768	C/C	CSHL-HAPMAP	HapMap-YRI	NA19142	YOR071.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5306	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19153	YOR072.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5309	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19144	YOR074.03	r27_ch12_YRI_illumina:human_1m_beadchip	802070
5310	ss1293768	T/T	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	r27_ch12_YRI_illumina:human_1m_beadchip	802070

Genotype data submitted for	1208	samples from	1208	individuals	Individual with multiple genotypes submission:	0

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .