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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs8040932          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_001130414.1:c.932T>C
NM_005503.2:c.932T>C
NM_005503.3:c.932T>C
NP_001123886.1:p.Leu311Pro
NP_005494.2:p.Leu311Pro
NT_010194.16:g.137576T>C
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss90104954 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs8040932 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss12341057WI_SSAHASNP|chr15.NT_010194.15_137576byFreqfwd/BC/Tagcccaagaccaggaccccagaagagaggcgaagtggccccacgagcaggtaggaccctg07/04/0310/25/06116Genomicunknown
ss90104954BCMHGSC_JDW|JWB-0835015fwd/BC/Tagcccaagaccaggaccccagaagagaggcgaagtggccccacgagcaggtaggaccctg02/26/0802/29/08129Genomicunknown
ss1139591261000GENOMES|NA19240_2008_12_16_2812220_chr15_27134311fwd/BC/Tagcccaagaccaggaccccagaagagaggcgaagtggccccacgagcaggtaggaccctg12/18/0812/18/08130Genomicunknown
ss118172969ILLUMINA-UK|NA18507_000010567_NCBI36.1_chr15_27134311fwd/BC/Tagcccaagaccaggaccccagaagagaggcgaagtggccccacgagcaggtaggaccctg01/20/0901/20/09130Genomic99 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs8040932|allelePos=251|totalLen=501|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 CAGATCGTGG CAGAGATCAA GATGAGTCTG AGCATGACCA GCATCACCAG CGCCAGTGAG
 GCCAGCCCCG AGCATGGGCC TGAGCCAGGG CCTGAGGACT CTGTAGAGGC CTGCCCACCC
 ATCAAGGCCA GCTGCAGCCC CAGCAGGCAC GAGGCGAGGC CCAAGTCGCT GAACCTCCTT
 CCCGAGGCCA AGCACCCCGG AGACCCCCAG AGAGGCTTCA AGCCCAAGAC CAGGACCCCA
 GAAGAGAGGC
 Y
 GAAGTGGCCC CACGAGCAGG TAGGACCCTG GCTGTCCTGG GGAAGGGAGC AGAGGGGCCC
 GAGAGCAAGG GACCTCAGGG TACAGGCCTT GCAGATGCTG AAGCGAGGCG GTGGGGGGTG
 CTGGGTGCCT CACAGTTCTA ATGGTGGCTG AGCTCTTCAT TGGTCCAGTT GGGAGACATG
 TTGCGTGGAT GCTCCGGCCA CTCTTAAGCT CACCGCTCAG ACTCAGGACT AAAGCCGGTT
 GAGGGCTGAG

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
NT_010194
dbSNP Blast Analysis
UniGene Cluster ID
525718

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source C/C
 C/T
 T/T
 HWP C
 T
ss12341057 HapMap-CEU European 120 IG 0.033 0.233 0.733 0.527 0.150 0.850
HapMap-HCB Asian 90 IG 0.044 0.156 0.800 0.100 0.122 0.878
HapMap-JPT Asian 88 IG 0.295 0.705 0.254 0.148 0.852
HapMap-YRI Sub-Saharan African 120 IG 0.650 0.350 0.150 0.825 0.175

Summary Average
Het.+/- std err:		 Individual
Count		 Founders
Count		 Individual
Overlap		 Genotype
Conflict
0.447+/-0.154 525 409 0 0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreqWith1000GenomeData
DoubleHit found by:  BCM_SSAHASNP
 UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .