Reference SNP(refSNP) Cluster Report: rs7497658

Reference SNP(refSNP) Cluster Report: rs7497658

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	116/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_015678.3:c.1903C>T
NP_056493.3:p.Arg635Cys
XM_001125807.1:c.241T>C
XP_001125807.1:p.Cys81Arg

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss90082519 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7497658 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss11319962	SC_JCM\|chr15.NT_037852.3_871179	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	07/03/03	10/10/03	116	Genomic	unknown
ss16676513	CSHL-HAPMAP\|CSHL-HuAA-200402.chr15.NT_037852.4_871179	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	02/17/04	03/04/04	120	Genomic	unknown
ss21290528	SSAHASNP\|WGSA-200403-chr15.chr15.NT_037852.4_871179	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	03/19/04	03/19/04	121	Genomic	unknown
ss77277225	HGSV\|Cor12156_SNV_20070510.chr15_19134911	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	10/09/07	10/12/07	129	Genomic	unknown
ss90082519	BCMHGSC_JDW\|JWB-0826473	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	02/26/08	02/29/08	129	Genomic	unknown
ss96741713	HUMANGENOME_JCVI\|1103645556154	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	03/27/08	03/27/08	130	Genomic	unknown
ss108655244	1000GENOMES\|CEU.trio.12.15.2008_3124736_chr15_19134911	fwd/T	A/G	cattatctttaataactgttcctattctgc	tatggtggtgtagatggtagcagttccaat	12/15/08	12/16/08	130	Genomic	unknown

Fasta sequence (Legend)

 CACAAACAAT TCTCAATATG TCAGTTTGCT ACATAAGAAA GAAAACATTT CAGTGATTTC
 ATAGTCATGT ACACGGCTCA CACTTTAACA GTACTCAGAA TACAGAATAT TCATAGGCAA
 ATGTAAATAC AGTGGAAGTG TTATACATAC CTAATCCTTT AGGTGTAATG CCACTACTGT
 CAGCAGGATT AATAACCCAG TAGTAATATT TTAAGGTGTG CATTATCTTT AATAACTGTT
 CCTATTCTGC
 R
 TATGGTGGTG TAGATGGTAG CAGTTCCAAT AAATTCAGCA GACAAATATG TATATAGGGA
 AAGTTGAACC TAATACAGAA TATTAACAGA TCATTAAAAT GAACTTAAAA TGCCTCAAGT
 GCTTATATTA TAAATATGCA TTGTTTTAAT TTAAACGCAA ATTAGTAAAG GCCAAGAAAT
 GATCATTTAT TAAGAGGTTA AAAATAACTT TCTTCTTCAA TATTATTTAT ATTTTAAAAA
 TATATAGCCA

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_037852 ABBA01152427

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .