Reference SNP(refSNP) Cluster Report: rs6577

Reference SNP(refSNP) Cluster Report: rs6577

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	52/130
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_000846.3:c.629A>C
NP_000837.2:p.Glu210Ala

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss48412471 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6577 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss8249	CGAP-GAI\|47733	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaatcaaggaagatttt	08/23/99	10/10/03	52	cDNA	99 %
ss869782	UWGC\|hgsta2-e7+f83	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaatcaaggaagatttt	09/12/01	04/07/04	103	Genomic	unknown
ss1527941	LEE\|478781	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaagcaaggaagatttt	09/13/00	10/10/03	102	cDNA	unknown
ss1528201	LEE\|483741	fwd/T	A/C	ggcagccccaaggaagccctcccatggatg	gaaatctttagaagaagcaaggaagatttt	09/13/00	10/10/03	102	cDNA	unknown
ss3671245	SC_JCM\|AC021133.5_26526	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	09/24/01	05/16/04	103	Genomic	unknown
ss4395142	LEE\|ge478781	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaatcaaggaagatttt	04/25/02	10/10/03	106	cDNA	unknown
ss4417877	LEE\|e478781	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaagcaaggaagatttt	04/26/02	10/10/03	106	cDNA	unknown
ss11839586	WI_SSAHASNP\|chr6.NT_007592.13_43412523	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	07/04/03	10/10/03	116	Genomic	unknown
ss16266079	CGAP-GAI\|1532557	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaatcaaggaagatttt	11/18/03	11/22/03	120	cDNA	unknown
ss48412471	APPLERA_GI\|hCV12027651	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	09/28/05	11/03/06	126	Genomic	unknown
ss74820000	AFFY\|SNP_M-322044	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaatcaaggaagatttt	08/09/07	08/09/07	128	Genomic	unknown
ss80852950	HGSV\|Cor18507_SNV_20070510.chr6_52723374	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	11/26/07	11/27/07	130	Genomic	unknown
ss84168940	PHARMGKB_AB_DME\|PS206042_PA147533915_301	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	12/06/07	12/09/07	130	Genomic	unknown
ss84726822	HGSV\|Cor19240_SNV_20070510.chr6_52723374	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	11/30/07	12/07/07	130	Genomic	unknown
ss104313392	BGI\|BGI_rs6577	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	06/08/08	06/19/09	130	Genomic	unknown
ss105440115	SNP500CANCER\|GSTA2-09	fwd/T	A/C	ctggcagcccaaggaagcctcccatggatg	gaaatctttagaagaatcaaggaagatttt	09/05/08	09/05/08	130	Genomic	unknown
ss114370584	1000GENOMES\|NA19240_2008_12_16_1363723_chr6_52723374	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	12/18/08	12/18/08	130	Genomic	unknown
ss116468979	ILLUMINA-UK\|NA18507_000078114_NCBI36.1_chr6_52723374	rev/B	G/T	aaaatcttccttgattcttctaaagatttc	catccatgggaggcttccttgggctgccag	01/17/09	01/17/09	130	Genomic	99 %

Fasta sequence (Legend)

 CTGATTAAAA TTTCAAGACA TCTTTGGGGA AAATAAAGTG AGCTACATGT TCTTCCTCTT
 ATCTTCCTTT CTCACTGGGT GTCTGTTTCT GCCTTCACCC AAGTGGAAGC GACTCACTTG
 GTCTTTGGCA GGAGGGACTC AGATTCCCTG GGTCATGTTA ATGGGGGTGT CAGCCCTTGA
 CTTGTTGTTT TAGTGAGGCT GTGCTTTGTG GATTACAGGC CCTGAAAACC AGAATCAGTA
 ACCTGCCCAC AGTGAAGAAG TTTCTACAGC CTGGCAGCCC AAGGAAGCCT CCCATGGATG
 M
 GAAATCTTTA GAAGAATCAA GGAAGATTTT CAGGTTTTAA TAAACCAGCC ATAGAGGTCA
 AGAACATGCA AGACCAGTAT TCTAAAGTTT TGCAACAATT AAGTGCTTTA CCTAAGTGTT
 GATTGTGCCT GTTGTGAAGC TAATGAACTC TTTCAAATTA TATGCTAATT AAATAATACA
 ACTCCTATTC ACCCACTTAG TTAAAATTGA TTTCTTCTCA TTAGGATCTG ATGTGAATTC
 AGTTTTCCAA TCTCCTCCTA GCCAACAATT TTCTTGGAAT TACAAATTCA GTAAAAATGG

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
S45640 AL109918 BI762502 Hs.89552 NM_000846

dbSNP Blast Analysis

UniGene Cluster ID
94107

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/C	C/C	HWP	A	C
ss105440115	P1		204	GF	0.657	0.225	0.118		0.770	0.230

	CAUC1		62	GF	0.839	0.161			0.919	0.081

	AFR1		48	GF	0.167	0.375	0.458		0.354	0.646

	HISP1		46	GF	0.783	0.217			0.891	0.109

	PAC1		48	GF	0.792	0.167	0.042		0.875	0.125

	P2		384	GF	0.526	0.260	0.214		0.656	0.344

	CAUC2		110	GF	0.836	0.127	0.036		0.900	0.100

	AFR2		110	GF	0.036	0.364	0.600		0.218	0.782

	P3		556	GF	0.647	0.201	0.151		0.748	0.252

	CAUC3		130	GF	0.877	0.123			0.938	0.062

	AFR3		150	GF	0.067	0.387	0.547		0.260	0.740

	HISP3		98	GF	0.980	0.020			0.990	0.010

	PAC3		178	GF	0.787	0.202	0.011		0.888	0.112

	ASI2		164	GF	0.646	0.280	0.073		0.787	0.213

ss3671245	CEPH		184	AF					0.920	0.080

ss48412471	HapMap-CEU	European	120	IG	0.867	0.133		0.584	0.933	0.067

	HapMap-HCB	Asian	84	IG	0.619	0.357	0.024	0.527	0.798	0.202

	HapMap-JPT	Asian	86	IG	0.605	0.256	0.140	0.025	0.733	0.267

	HapMap-YRI	Sub-Saharan African	120	IG	0.033	0.383	0.583	0.479	0.225	0.775

	AGI_ASP population	multiple	78	IG	0.487	0.308	0.205	0.050	0.641	0.359

ss84168940	PA147533916		356	AF					0.694	0.306

ss869782	NIHPDR	Global	78	IG	0.487	0.436	0.077	1.000	0.705	0.295