Reference SNP(refSNP) Cluster Report: rs56379106

Reference SNP(refSNP) Cluster Report: rs56379106

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	129/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_000662.4:c.190C>T
NP_000653.3:p.Arg64Trp
NT_030737.9:g.5924674C>T

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss105439097 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs56379106 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss75246482	ILLUMINA\|ILMN_Human_1M_SNP6	fwd/B	C/T	gccatttttgatcaagttgtgagaagaaat	ggggtggatggtgtctccaggtcaatcatc	08/28/07	08/29/07	129	Genomic	unknown
ss105434751	AFFY_DM3_1\|DMET3B14970	fwd/B	C/T	gccatttttgatcaagttgtgagaagaaat	ggggtggatggtgtctccaggtcaatcatc	09/03/08	09/03/08	130	Genomic	unknown
ss105439097	SNP500CANCER\|NAT1-19	fwd/B	C/T	gccatttttgatcaagttgtgagaagaaat	ggggtggatggtgtctccaggtcaatcatc	09/05/08	09/05/08	130	Genomic	unknown

Fasta sequence (Legend)

 ATAACCATTG TATTTTTACA TGTTTAAAAT ATAGCCATAA TTAGCCTACT CAAATCCAAG
 TGTAAAAGTA AWATGWTTTG CTTTCGTTTT GTTTTCCTTG CTTAGGGGAT CATGGACATT
 GAAGCATATC TKGAAAGAAT TGGCTATAAG AAGTCTAGGA ACAAATTGGA CTTGGAAACA
 TTAACTGACA TTCTTCAACA CCAGATCYGA GCTGTTCCCT TTGAGAACCT TAACATCCAT
 TGTGGGGATG CCATGGACTT AGGCTTAGAG GCCATTTTTG ATCAAGTTGT GAGAAGAAAT
 Y
 GGGGTGGATG GTGTCTCCAG GTCAATCATC TTCTGTACTG GGCTCTGACC ACTATTGGTT
 TTGAGACCAC GATGTTGGGA GGGTATGTTT ACAGCACTCC AGCCAAAAAA TACAGCACTG
 GCATGATTCA CCTTCTCCTG CAGGTGACCA TTGATGGCAN NAACTACATT GTYGATGCTG
 GGTTTGGACG CTCATACCAG ATGTGGCAGC CYCTGGAGTT AATTTCTGGG AAGGATCAGC
 CTCMGGTGCC TTGTRTCTTC CGTTTGACRG AAGAGAATGG ATTCTGGTAT CTAGACCAAA

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	HWP	C	T
ss105439097	P2		420	GF	0.990	0.010		0.995	0.005

	CAUC2		120	GF	0.967	0.033		0.983	0.017

	AFR2		120	GF	1.000			1.000

	P3		554	GF	0.996	0.004		0.998	0.002

	CAUC3		130	GF	0.985	0.015		0.992	0.008

	AFR3		150	GF	1.000			1.000

	HISP3		98	GF	1.000			1.000

	PAC3		176	GF	1.000			1.000

	ASI2		180	GF	1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.006+/-0.055	0	0	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .