Reference SNP(refSNP) Cluster Report: rs3735386

Reference SNP(refSNP) Cluster Report: rs3735386

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	107/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_001637.1:c.797C>G
NM_001637.2:c.797C>G
NP_001628.1:p.Ala266Gly
NT_007819.16:g.36144993G>C

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss44810807 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3735386 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss4921384	YUSUKE\|IMS-JST089265	fwd/B	C/G	gaatcattttgctgggagactcagctgggg	tcattttcacatctctcctgaatggatcac	07/24/02	10/10/03	107	Genomic	unknown
ss44810807	ABI\|hCV11232841	rev/	C/G	gtgatccattcaggagagatgtgaaaatga	ccccagctgagtctcccagcaaaatgattc	07/19/05	11/03/06	126	Genomic	unknown
ss48411848	APPLERA_GI\|hCV11232841	rev/	C/G	gtgatccattcaggagagatgtgaaaatga	ccccagctgagtctcccagcaaaatgattc	09/28/05	11/03/06	126	Genomic	unknown
ss69012807	PERLEGEN\|PGP04778220	rev/	C/G	gtgatccattcaggagagatgtgaaaatga	ccccagctgagtctcccagcaaaatgattc	01/30/07	03/31/08	127	Genomic	unknown
ss74817236	AFFY\|SNP_M-315028	fwd/B	C/G	gaatcattttgctgggagactcagctgggg	tcattttcacatctctcctgaatggatcac	08/09/07	08/09/07	128	Genomic	unknown
ss74908117	ILLUMINA\|ILMN_Human_1M_rs3735386	fwd/	C/G	gaatcattttgctgggagactcagctgggg	tcattttcacatctctcctgaatggatcac	08/28/07	08/29/07	129	Genomic	unknown
ss76598092	AFFY\|AFFY_6_1M_SNP_A-8459175	rev/	C/G	agagatgtgaaaatga	ccccagctgagtctcc	08/28/07	08/30/07	130	Genomic	unknown
ss98255152	HUMANGENOME_JCVI\|1103652546544	rev/	C/G	gtgatccattcaggagagatgtgaaaatga	ccccagctgagtctcccagcaaaatgattc	03/31/08	03/31/08	130	Genomic	unknown

Fasta sequence (Legend)

 AGATGTTTTA TGCTGAGCTG GGAAACACAC CTGCATCTCT ACATCTTAGC TAGCAGCTCC
 AATGGCCTGG AAATCTCATT CAGCTCCGAA ATGCTATGCC CCTCACTCTC AAACATGCGA
 AAAGTGGTAA TGCATTACTG TGAAAATGCT CGGTGCCTGG AATACACACT AGGGTATCCG
 CTCTTATAAC TACCCAGTCT GGAGGTTCCA AACTACTTGA GTGCATAAAT AATGTGAATA
 AATTGTGCTG CCTAGGTTCA CAGCCCAGGG GAATCATTTT GCTGGGAGAC TCAGCTGGGG
 S
 TCATTTTCAC ATCTCTCCTG AATGGATCAC AGCGTCGCAG ATGTCTTTGG TAAGTAATTT
 TGGCAGTAAT CATTCCAGAT GTGCTGGCCT TTGTTTTTGT TTCCTCTTGC TCTCTCTAAA
 TGGGATGCCA ACTCCACACA GGTGCAAATT TCCCTCTTTA GCAAAATCTG CCATGAAAGG
 CATATCCACA GTCATTTCAG TCCTAGACAA ATGGCAAAAG GTTCCTTCTA CTCACCTCCC
 CAGCCTCAGC CCAGCTGCTG CCAGGAACCC TGAAGGCAGC AGTGGGGAGT CAAGAAGGTG

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_007819.1 ABBA01056908

dbSNP Blast Analysis

UniGene Cluster ID
488007

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/G	HWP	C	G
ss44810807	HapMap-CEU	European	112	IG	0.804	0.196	0.439	0.902	0.098

	HapMap-HCB	Asian	86	IG	0.907	0.093	0.752	0.953	0.047

	HapMap-JPT	Asian	90	IG	0.933	0.067	1.000	0.967	0.033

	HapMap-YRI	Sub-Saharan African	118	IG	1.000			1.000

	AoD_African_American		90	AF				0.940	0.060

	AoD_Caucasian		92	AF				0.910	0.090

	AoD_Chinese		90	AF				0.970	0.030

	AoD_Japanese		90	AF				0.940	0.060

ss48411848	AGI_ASP population	multiple	70	IG	0.857	0.143	0.655	0.929	0.071

ss69012807	HapMap-CEU	European	120	GF	0.750	0.250		0.875	0.125

	HapMap-HCB	Asian	90	GF	0.867	0.133		0.933	0.067

	HapMap-JPT	Asian	90	GF	0.933	0.067		0.967	0.033

	HapMap-YRI	Sub-Saharan African	120	GF	1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.099+/-0.200	1247	1041	270	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .