Reference SNP(refSNP) Cluster Report: rs3625

Reference SNP(refSNP) Cluster Report: rs3625

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	36/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_001135047.1:c.37A>G
NM_001135048.1:c.37A>G
NM_001135049.1:c.70A>G
NM_130469.3:c.37A>G
NP_001128519.1:p.Thr13Ala
NP_001128520.1:p.Thr13Ala
NP_001128521.1:p.Thr24Ala
NP_569736.1:p.Thr13Ala

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss43573334 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3625 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss3660	WIAF\|WIAF-2388	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggcccctgac	01/23/99	12/23/03	36	cDNA	unknown
ss10757052	BCM_SSAHASNP\|chr14.NT_026437.10_55824701	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	06/30/03	05/16/04	116	Genomic	unknown
ss14532442	WUGSC_SSAHASNP\|chr14.NT_026437.10_55824701	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	11/05/03	11/22/03	119	Genomic	unknown
ss19309325	CSHL-HAPMAP\|CSHL-HuDD-200402.chr14.NT_026437.10_55824701	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	02/20/04	03/04/04	120	Genomic	unknown
ss24606853	PERLEGEN\|afd0204528	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	08/10/04	09/13/04	123	Genomic	unknown
ss43573334	ABI\|hCV2200671	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	07/18/05	11/03/06	126	Genomic	unknown
ss65727463	ILLUMINA\|Human1-rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	10/10/06	10/10/06	127	Genomic	unknown
ss66544051	ILLUMINA\|HumanHap300v1.1_rs3625	fwd/B	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	11/09/06	11/09/06	127	Genomic	unknown
ss67296785	ILLUMINA\|HumanHap550v1.1_rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	11/14/06	11/14/06	127	Genomic	unknown
ss67701186	ILLUMINA\|HumanHap650Yv1.0_rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	11/14/06	11/14/06	127	Genomic	unknown
ss69162313	PERLEGEN\|PGP00204528	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	01/30/07	08/14/07	127	Genomic	unknown
ss70775407	ILLUMINA\|HumanHap550v3.0__rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	04/20/07	03/30/08	130	Genomic	unknown
ss71351351	ILLUMINA\|HumanHap650Yv3.0_rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	04/23/07	04/23/07	127	Genomic	unknown
ss75472146	ILLUMINA\|ILMN_Human_1M_rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	08/28/07	08/29/07	129	Genomic	unknown
ss79162747	ILLUMINA\|HumanHap300v2.0_rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	04/18/07	11/18/07	130	Genomic	unknown
ss82989235	HGSV\|Cor18555_SNV_20070510.chr14_74974413	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	11/27/07	12/04/07	130	Genomic	unknown
ss83300971	HGSV\|Cor18956_SNV_20070510.chr14_74974413	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	11/30/07	12/04/07	130	Genomic	unknown
ss83346046	KRIBB_YJKIM\|KHS439801	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	12/04/07	12/04/07	130	Genomic	unknown
ss86348422	CANCER-GENOME\|13612	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	01/25/08	01/25/08	129	Genomic	unknown
ss89997190	BCMHGSC_JDW\|JWB-0794000	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	02/26/08	02/29/08	129	Genomic	unknown
ss96928641	HUMANGENOME_JCVI\|1103649100812	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	03/27/08	03/27/08	130	Genomic	unknown
ss106398531	BGI\|BGI_rs3625	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	09/15/08	06/18/09	130	Genomic	unknown
ss108462577	1000GENOMES\|CEU.trio.12.15.2008_3077529_chr14_74974413	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	12/15/08	12/15/08	130	Genomic	unknown
ss113541151	1000GENOMES\|NA19240_2008_12_16_2759480_chr14_74974413	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	12/18/08	12/18/08	130	Genomic	unknown
ss118586860	ILLUMINA-UK\|NA18507_000069774_NCBI36.1_chr14_74974413	fwd/T	A/G	cctgggcagatcccggacccttcggtgacc	caggctccctgccagggcttggccccctga	01/21/09	01/21/09	130	Genomic	99 %

Fasta sequence (Legend)

 GCCTTCAAAA TAAAAAAGGC AGACACTTCT GGCAGTGCCA AGGGTGACCT TGGTGTGAGT
 TAATTGAGCA ACTTTTCCTC TATAACAGGA AGGACTTTAC GGCAGGAAGA GCAGCTGGGT
 GGGAAAGGGA TTCAGGGGAA CATTGGTGAA AGAAGCCACA GTCCTGGCAA GACGAGGGAC
 TTGAGCCCTC CTGGAGCCCC CAACCTGGCT GACTGTCCTG CTCTTTTCCT GCCCACTCCA
 GGCTGGCCTG CCACTCCTCC TGCTATGATG CCTGGGCAGA TCCCGGACCC TTCGGTGACC
 R
 CAGGCTCCCT GCCAGGGCTT GGCCCCCTGA CCGGGCTCCC CAGCTCGGCC CTGACTGTGG
 AGGAGCTGAA ATACGCTGAC ATCCGCAACC TCGGGGCCAT GATTGCACCC TTGCACTTCC
 TGGAGGTGAA ACTGGGCAAG AGGCCCCAGC CCGTGAAAAG TGAGGTGAGC GAGCCTTTTA
 CCCCTGGCAG ATTCCAGGTC TGGCCTTAAA CCCACCATGG GACCTTAACC TTGCTGTTCA
 AAGTGTGGTC TGAGGACCAG TATCATCCGT ACCACCCTGG GGTTATCAGA AATGTGGAAT

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
dbSTS	GenBank
G43530	NT_026437 ABBA01030698

dbSNP Blast Analysis

UniGene Cluster ID
196482

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G	N
ss10757052	CEPH		184	AF					0.610	0.390

	CHMJ	Asian	74	IG					0.284	0.662	0.054

ss24606853	AFD_EUR_PANEL	European	46	IG	0.304	0.435	0.261	0.584	0.522	0.478

	AFD_AFR_PANEL	African American	46	IG	0.043	0.478	0.478	0.403	0.283	0.717

	AFD_CHN_PANEL	Asian	48	IG	0.167	0.250	0.583	0.100	0.292	0.708

ss43573334	HapMap-CEU	European	120	IG	0.250	0.450	0.300	0.479	0.475	0.525

	HapMap-HCB	Asian	90	IG	0.111	0.356	0.533	0.371	0.289	0.711

	HapMap-JPT	Asian	90	IG	0.156	0.422	0.422	0.479	0.367	0.633

	HapMap-YRI	Sub-Saharan African	120	IG		0.283	0.717	0.251	0.142	0.858

	AoD_African_American		90	AF					0.240	0.760

	AoD_Caucasian		92	AF					0.490	0.510

ss69162313	HapMap-CEU	European	120	GF	0.433	0.367	0.200		0.617	0.383

	HapMap-HCB	Asian	90	GF	0.200	0.533	0.267		0.467	0.533

	HapMap-JPT	Asian	90	GF	0.267	0.489	0.244		0.511	0.489

	HapMap-YRI	Sub-Saharan African	120	GF	0.100	0.517	0.383		0.358	0.642

Concordant Genotype	Total Sample	A/A	A/G	G/G
ss24606853	70	12	27	30
ss43573334	1122	157	450	494
ss96928641	1		1

RefSNP Genotype Summary	Total Individual	A/A	A/G	G/G
rs3625	1264	165	472	523

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
161	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA07029	CEPH1340.01	r27_ch14_CEU_illumina:human_1m_beadchip	840654
169	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA06994	CEPH1340.09	r27_ch14_CEU_illumina:human_1m_beadchip	840654
170	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA07000	CEPH1340.10	r27_ch14_CEU_illumina:human_1m_beadchip	840654
171	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA07022	CEPH1340.11	r27_ch14_CEU_illumina:human_1m_beadchip	840654
185	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA07055	CEPH1341.12	r27_ch14_CEU_illumina:human_1m_beadchip	840654
199	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA12056	CEPH1344.12	r27_ch14_CEU_illumina:human_1m_beadchip	840654
213	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA07357	CEPH1345.12	r27_ch14_CEU_illumina:human_1m_beadchip	840654
225	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA12043	CEPH1346.11	r27_ch14_CEU_illumina:human_1m_beadchip	840654
226	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA12044	CEPH1346.12	r27_ch14_CEU_illumina:human_1m_beadchip	840654
255	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	r27_ch14_CEU_illumina:human_1m_beadchip	840654
264	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA11831	CEPH1350.12	r27_ch14_CEU_illumina:human_1m_beadchip	840654
348	ss24606853	G/G	PERLEGEN	AFD_EUR_PANEL	NA10860		71_IND_CHR_14
348	ss43573334	N/N	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r27_ch14_CEU_illumina:human_1m_beadchip	840654
361	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA11993	CEPH1362.14	r27_ch14_CEU_illumina:human_1m_beadchip	840654
438	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	r27_ch14_CEU_illumina:human_1m_beadchip	840654
439	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA12249	CEPH1416.12	r27_ch14_CEU_illumina:human_1m_beadchip	840654
464	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	r27_ch14_CEU_illumina:human_1m_beadchip	840654
465	ss43573334	N/N	CSHL-HAPMAP	HapMap-CEU	NA12004	CEPH1420.10	r27_ch14_CEU_illumina:human_1m_beadchip	840654
618	ss43573334	G/G	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	r27_ch14_CEU_illumina:human_1m_beadchip	840654
623	ss43573334	A/G	CSHL-HAPMAP	HapMap-CEU	NA12878	CEPH1463.02	r27_ch14_CEU_illumina:human_1m_beadchip	840654
5135	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19128	YOR077.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5137	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5138	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA19130	YOR101.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5140	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA19099	YOR105.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5144	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19192	YOR112.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5149	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5154	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18562	CH18562	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5162	ss43573334	N/N	CSHL-HAPMAP	HapMap-HCB	NA18547	CH18547	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5163	ss43573334	A/G	CSHL-HAPMAP	HapMap-HCB	NA18609	CH18609	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5165	ss43573334	A/G	CSHL-HAPMAP	HapMap-HCB	NA18608	CH18608	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5168	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18555	CH18555	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5170	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18566	CH18566	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5171	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5172	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18570	CH18570	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5173	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18612	CH18612	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5175	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5179	ss43573334	A/G	CSHL-HAPMAP	HapMap-HCB	NA18573	CH18573	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5182	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5188	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18635	CH18635	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5190	ss43573334	A/G	CSHL-HAPMAP	HapMap-HCB	NA18636	CH18636	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5191	ss43573334	G/G	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	r27_ch14_CHB_illumina:human_1m_beadchip	840654
5200	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5204	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5207	ss43573334	A/G	CSHL-HAPMAP	HapMap-JPT	NA18959	JA18959	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5210	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18961	JA18961	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5211	ss43573334	A/G	CSHL-HAPMAP	HapMap-JPT	NA18972	JA18972	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5212	ss43573334	A/G	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5213	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18973	JA18973	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5215	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18975	JA18975	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5217	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5223	ss43573334	A/G	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5226	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5235	ss43573334	G/G	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	r27_ch14_JPT_illumina:human_1m_beadchip	840654
5237	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA18501	YOR004.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5238	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18503	YOR005.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5239	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18505	YOR005.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5240	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5241	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18506	YOR009.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5242	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18508	YOR009.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5243	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18507	YOR009.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5245	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5248	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5249	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18516	YOR013.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5256	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5257	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5259	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18857	YOR023.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5262	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA18863	YOR024.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5263	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18861	YOR024.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5264	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA18862	YOR024.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5265	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18914	YOR028.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5266	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5267	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5270	ss43573334	N/N	CSHL-HAPMAP	HapMap-YRI	NA19092	YOR040.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5274	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19139	YOR043.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5276	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA19138	YOR043.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5283	ss43573334	N/N	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5284	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19204	YOR048.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5289	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19208	YOR051.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5290	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19206	YOR051.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5294	ss43573334	A/G	CSHL-HAPMAP	HapMap-YRI	NA19160	YOR056.03	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5295	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5296	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5302	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19140	YOR071.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5307	ss43573334	N/N	CSHL-HAPMAP	HapMap-YRI	NA19145	YOR074.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5308	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19143	YOR074.02	r27_ch14_YRI_illumina:human_1m_beadchip	840654
5310	ss43573334	G/G	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	r27_ch14_YRI_illumina:human_1m_beadchip	840654

Genotype data submitted for	1279	samples from	1264	individuals	Individual with multiple genotypes submission:	15

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

Validated by: PERLEGEN

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .