Reference SNP(refSNP) Cluster Report: rs36121405

Reference SNP(refSNP) Cluster Report: rs36121405

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_002288.3:c.232G>A
NM_021270.2:c.232G>A
NP_002279.2:p.Gly78Ser
NP_067154.1:p.Gly78Ser
NT_011109.15:g.27287457G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss48410639 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs36121405 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss48410639	APPLERA_GI\|hCV25943473		fwd/T	A/G	tacaaagatagttataatgtgtttcgactt	gtccatctgagtcagaggccagattccaca	09/28/05	11/03/06	126	Genomic			unknown
ss69231486	PERLEGEN\|PGP17792369		fwd/T	A/G	tacaaagatagttataatgtgtttcgactt	gtccatctgagtcagaggccagattccaca	01/30/07	01/30/07	127	Genomic			unknown

Fasta sequence (Legend)

 GTTCTAAGGT TGGGCTGTGG TCGTGGCTGC ATAACTCTAT AAAATTGCTA AAATCCCTGA
 ATTGTGATCC TAAAATGACG TGTGTGGCAT GGTGACTTCC TACAGTGGAC GCTGAGATCC
 TTCTTTGCTT CCCTCTTAGG GGCCCTTCCC AGACCCTCCA TCTCGGCTGA GCCAGGCACT
 GTGATCTCCC CGGGGAGCCA TGTGACTTTC ATGTGCCGGG GCCCGGTTGG GGTTCAAACA
 TTCCGCCTGG AGAGGGAGGA TAGAGCCAAG TACAAAGATA GTTATAATGT GTTTCGACTT
 R
 GTCCATCTGA GTCAGAGGCC AGATTCCACA TTGACTCAGT AAGTGAAGGA AATGCCGGGC
 TTTATCGCTG CCTCTATTAT AAGCCCCCTG GATGGTCTGA GCACAGTGAC TTCCTGGAGC
 TGCTGGTGAA AGGTAAGGAC GTCACCTGGG CCCTGCCCCA GTCTCAGCTC AACCCTCGAG
 CTTGTCCCGA GGTCCCTGGA CCCTGTCCCG GCTGCTGTCC TCTCTCTGTG GCCACCGTTG
 CCCTCTTCCT GACCCCAAGC CCTCCCCTTC TTCCTCTGCA CACACCTCCC CTCTGCCCTC

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NC_000019.8

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/G	G/G	HWP	A	G
ss48410639	AGI_ASP population	multiple	58	IG	0.103	0.897	1.000	0.052	0.948

ss69231486	HapMap-CEU	European	120	GF		1.000			1.000

	HapMap-HCB	Asian	90	GF		1.000			1.000

	HapMap-JPT	Asian	90	GF		1.000			1.000

	HapMap-YRI	Sub-Saharan African	120	GF		1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.012+/-0.078	36	36	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .