Reference SNP(refSNP) Cluster Report: rs35948511

Reference SNP(refSNP) Cluster Report: rs35948511

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_153330.2:c.457A>C
NP_699161.1:p.Met153Leu
NT_005612.15:g.34676778T>G

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss48408484 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35948511 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss48408484	APPLERA_GI\|hCV25640981	fwd/T	A/C	gccttcatggaggccttctcatccttcaac	tgctgggctgcagcgggggcagccacacca	09/28/05	11/03/06	126	Genomic	unknown
ss68875010	PERLEGEN\|PGP17791175	rev/B	G/T	tggtgtggctgcccccgctgcagcccagca	gttgaaggatgagaaggcctccatgaaggc	01/30/07	03/31/08	127	Genomic	unknown
ss110904784	1000GENOMES\|NA19240_2008_12_16_718150_chr3_129664322	rev/B	G/T	tggtgtggctgcccccgctgcagcccagca	gttgaaggatgagaaggcctccatgaaggc	12/16/08	12/17/08	130	Genomic	unknown
ss117268368	ILLUMINA-UK\|NA18507_000166972_NCBI36.1_chr3_129664322	rev/B	G/T	tggtgtggctgcccccgctgcagcccagca	gttgaaggatgagaaggcctccatgaaggc	01/18/09	01/19/09	130	Genomic	99 %

Fasta sequence (Legend)

 TATGAGGTTC TGTCTGACTC CAAGAAACGC TCCCTGTATG ACCGTGCTGG CTGTGACAGC
 TGGCGGGCTG GTGGCGGGGC CAGCACGCCC TACCACAGCC CCTTCGACAC CGGCTACACC
 TTCCGTAACC CTGAGGACAT CTTCCGGGAG TTTTTCGGTG GCCTGGACCC TTTCTCCTTT
 GAGTTCTGGG ACAGCCCATT CAATAGTGAC CGTGGTGGCC GGGGCCATGG CCTGAGGGGG
 GCCTTCTCGG CAGGCTTTGG AGAATTTCCG GCCTTCATGG AGGCCTTCTC ATCCTTCAAC
 M
 TGCTGGGCTG CAGCGGGGGC AGCCACACCA CCTTCTCATC CACCTCCTTC GGGGGCTCCA
 GTTCTGGCAG CTCGGGGTTC AAGTCGGTGA TGTCGTCCAC CGAGATGATC AATGGCCACA
 AGGTCACCAC CAAGCGCATC GTGGAGAACG GGCAGGAGCG CGTGGAGGTG GAGGAAGACG
 GGCAGCTCAA GTCGGTGACT GTGAACGGCA AGGAGCAGCT CAAATGGATG GACAGCAAGT
 AGGCGCTGGC CACCCGGCCC TGCCTTCCCA CCACCACCAC CGTGCATGGG GCAGCAAACA

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NC_000003.9

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/C	HWP	A	C
ss48408484	AGI_ASP population	multiple	76	IG	0.895	0.105	0.752	0.947	0.053

ss68875010	HapMap-CEU	European	120	GF	1.000			1.000

	HapMap-HCB	Asian	90	GF	1.000			1.000

	HapMap-JPT	Asian	90	GF	1.000			1.000

	HapMap-YRI	Sub-Saharan African	120	GF	0.783	0.217		0.892	0.108

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.066+/-0.169	308	248	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .