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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs35227875          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_016013.2:c.235G>A
NM_016013.2:c.526G>A
NP_057097.2:p.Asp79Asn
NP_057097.2:p.Glu176Lys
NT_010194.16:g.12479289C>T
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss48413282 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35227875 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss48413282APPLERA_GI|hCV25769521byFreqfwd/BC/Ttcattgcacagtacccacttcgggtagactcccgtcctgaggcgcctcagagctcagagt09/28/0511/03/06126Genomicunknown
ss74965880ILLUMINA|ILMN_Human_1M_rs35227875fwd/BC/Ttcattgcacagtacccacttcgggtagactcccgtcctgaggcgcctcagagctcagagt08/28/0708/29/07129Genomicunknown
ss1087647391000GENOMES|CEU.trio.12.15.2008_3151458_chr15_39476024fwd/BC/Ttcattgcacagtacccacttcgggtagactcccgtcctgaggcgcctcagagctcagagt12/15/0812/16/08130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs35227875|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 TAACAATGCT CGTTCCTGGC CCAAAGCAAT GCGCAGAAAC AAGTTAACTC CTCCTCCTCA
 GAAACCACTT CCCCCTTGTG CTTCCACTTC ACACTTGTGC CAATAGTTAC TTATCCCCAG
 ACACAGGTGA GGTGCCAAAT ATAACATGCC AGGTGTTTTC ATTTACAGAA ACAAAAGCTA
 TCTTCTATAG TTTATGCTAC AATGAAGTTC ACCCCTGTTT ACTAGAAAAC GATGGCTCCT
 GGGCCTCACC TACCCTTGGA ATCCTGGATA TCATTGCACA GTACCCACTT CGGGTAGACT
 Y
 CCCGTCCTGA GGCGCCTCAG AGCTCAGAGT TCCATATAGC AGTGCACTTT GGTTATTCTT
 GCCCATTTTC AAAAACACTT CACTTCTGCC TCCAATCGTC TTATCAGAAG TCACTGTCCA
 CTTATCCAAA TCTTCTTTCC CCCGGAATTG CCAGACAACC TTGGCTTGTT CCAGCAAGAC
 CTCATGCAGA GGGTGGCCTT CCGGTCCTCT CCAATGATCC ACAATTTCAT CCTTCAAAAG
 CCTAAAATGG TATATTGCTT CATCTCTAAT TGCTTTATCG AAACTAACAT CAGGCTTCTC

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source C/C
 C/T
 HWP C
 T
ss48413282 AGI_ASP population multiple 74 IG 0.946 0.054 1.000 0.973 0.027

Summary Average
Het.+/- std err:		 Individual
Count		 Founders
Count		 Individual
Overlap		 Genotype
Conflict
0.053+/-0.153 809 632 0 0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqWith1000GenomeData UNKNOWN UNKNOWN UNKNOWN

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Revised: May 25, 2006 1:38 PM .