Reference SNP(refSNP) Cluster Report: rs34089525

Reference SNP(refSNP) Cluster Report: rs34089525

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_015596.1:c.325C>T
NP_056411.1:p.His109Tyr
NT_011109.15:g.23831455G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss48408088 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs34089525 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss48408088	APPLERA_GI\|hCV25640532	fwd/T	A/G	ggtgggtggggcttctccggtattcagggt	ggggatagagtggacaacttccctcacctg	09/28/05	11/03/06	126	Genomic	unknown
ss69230315	PERLEGEN\|PGP17791354	fwd/T	A/G	ggtgggtggggcttctccggtattcagggt	ggggatagagtggacaacttccctcacctg	01/30/07	03/31/08	127	Genomic	unknown
ss86342825	CANCER-GENOME\|18041	fwd/T	A/G	ggtgggtggggcttctccggtattcagggt	ggggatagagtggacaacttccctcacctg	01/25/08	01/25/08	129	Genomic	unknown

Fasta sequence (Legend)

 TTTACTTATT TATATTTTTA TATATAAAGG AACCTACCTC AGACCTTCCC TCCCATCTCT
 GCCCCTGTTT CCCCAGCCAC TCCTATGGGG CCTCAGGCCA CCTGTGTGGG TGCATACCCT
 GGGGGCTGGT GGTGGTGCCC CAGCCAGACA CCCGACAGGT GGTGCCAGGG GTTAGGCGGT
 TGTTGTGGGA AAGGGGCAGG GTTTGGATGT AGCCTGTGAG CTGGACCGGG GACTGCAGCT
 CCAGAAGCAT GATGTCATGG TCGTGGTTCA GGTGGGTGGG GCTTCTCCGG TATTCAGGGT
 R
 GGGGATAGAG TGGACAACTT CCCTCACCTG CTCACCAGCT TCCACACGCC CTAGGGCGTG
 CTTGCCTAGG TAAACTTTGA GCCCCCTGTG GGTGCAGAAA GAAGGTGGTT AGGAAAGAAG
 ATGAGCCCAT TTCCATCCCC ATCCCAGCCC CAACCTCTTC CCATCCCCAA CCTAACTTCT
 TCTCCATCCT ACCTTCCTCA TCTCCAAATA CATCTCCCCC ATCCTCAACT TCAATCCCAT
 CCAAATCCCC TACTTTGATT CTATTCCCAT ACCCAATCCC CATATCTCAA CCCCAAACCT

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NC_000019.8

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss48408088	AGI_ASP population	multiple	72	IG		0.083	0.917	1.000	0.042	0.958

ss69230315	HapMap-CEU	European	120	GF	0.017	0.033	0.950		0.033	0.967

	HapMap-HCB	Asian	90	GF			1.000			1.000

	HapMap-JPT	Asian	90	GF			1.000			1.000

	HapMap-YRI	Sub-Saharan African	120	GF			1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.028+/-0.115	36	36	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .