| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 125/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | G/T | | Ancestral Allele: | T | | Clinical Association: | unknown |
| | HGVS Names | | NG_007482.1:g.11694T>G | | NM_000149.3:c.59T>G | | NM_001097639.1:c.59T>G | | NM_001097640.1:c.59T>G | | NM_001097641.1:c.59T>G | | NP_000140.1:p.Leu20Arg | | NP_001091108.1:p.Leu20Arg | | NP_001091109.1:p.Leu20Arg | | NP_001091110.1:p.Leu20Arg |
| |
SNP Details are organized in the following sections:
The submission ss77047583 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs28362459 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss35033226 | PGA-UW-FHCRC|FUT3-008504 |   | fwd/B | G/T | aatggccatggcgccgctgtctggccgcac | gctatttcagctgctggtggctgtgtgttt | 02/08/05 | 11/02/06 | 125 | Genomic | | | unknown | | ss77047583 | DBMHC|FUT3_2611_59_0 | | fwd/B | G/T | aatggccatggcgccgctgtctggccgcac | gctatttcagctgctggtggctgtgtgttt | 10/01/07 | 10/04/07 | 129 | Genomic | | | unknown | | ss85708720 | HGSV|Cor19129_SNV_20070510.chr19_5795792 | | rev/T | A/C | aaacacacagccaccagcagctgaaatagc | gtgcggccagacagcggcgccatggccatt | 12/06/07 | 12/10/07 | 130 | Genomic | | | unknown | | ss103420072 | BGI|BGI_rs28362459 | | rev/T | A/C | aaacacacagccaccagcagctgaaatagc | gtgcggccagacagcggcgccatggccatt | 06/06/08 | 06/17/09 | 130 | Genomic | | | unknown |
>gnl|dbSNP|rs28362459|allelePos=1001|totalLen=2001|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=130 TCAGCTTACT GCAACCTCTG CCTCCCAGGT TCAAGTGATT CTCATGCCTC AGCCTCCCGA
GCAGCTGGGA TTACAGGCAT GAGCCACCAC ACTCGGCTTA TTTTTGTATT TTTGGTAGAA
ACAGGGTTTC ACCATGTTGG CCAGGCTGGT CTCAAACTCC TGACCTCAAG TGATCCACCT
GCCTCAGCCT CCCAAAGTGC TGGGATTACA GGCATGAGCC ACCAAACCCG GCTATTATTT
ATTTATTTAT TTTTGAGACA CAATCTCCCT CTGTCACCCA GGCTGGAATG CAGTGGTGTC
ATCTTGGCTC ACTGCAACCT CCGCCTCCTG GGTTCAAGTG ATTCTCGTGC CTCAGCCTCC
CAAGTAGCTG GGACTACAGG TGTGCACCAC CACACCCAGC TAATTTTTGT ATTTTTAGTA
GAAATGGGGT TTCATCATGT TGGCCAGGCT GGTCTTAAAT TCCTGACCTC AGGTGATCTG
CTCACCTCGG CCTCCCAAAG TGCTGGGACT ACAGGTGTGA GCCACTCTGC TCGGCCGGTC
AGCTCATATA TTACCTGCAA AACCCAGTCC CATTGTACCT TTCTCTGGCT GAGTCATGGA
TTCAAGCCTT GCCTCAGTGA CATGGGAAGC AATGATGACC GGCTATGCCT TCTCCCCTGC
CTCCAGGGCA CTTGTATTTC AGTAGACTGG GGAAGACTTC GGGGATTCCA GGAAAGGTCT
TGTCTAATAG GTAGAAGGAA GTGGACTCTG GGACAAGGTC CCTTTGTTCA AACACCAGCT
GTGCTGATTT TTGCTGTGAG TCACTTGGTC TCAGTTTTCT CATCTGTGAA ACAGGAATAA
TAGCAGCTCC TCTCAGGACT CATGGCCCGG AGCTTTGGTA AGCAGGAGAT TGTCATCAAT
GACCCTCACT CCTCTCTCCT CTCTTCCCAG ATACTCTGAC CCATGGATCC CCTGGGTGCA
GCCAAGCCAC AATGGCCATG GCGCCGCTGT CTGGCCGCAC
K
GCTATTTCAG CTGCTGGTGG CTGTGTGTTT CTTCTCCTAC CTGCGTGTGT CCCGAGACGA
TGCCACTGGA TCCCCTAGGG CTCCCAGTGG GTCCTCCCGA CAGGACACCA CTCCCACCCG
CCCCACCCTC CTGATCCTGC TACGGACATG GCCTTTCCAC ATCCCTGTGG CTCTGTCCCG
CTGTTCAGAG ATGGTGCCCG GCACAGCCGA CTGCCACATC ACTGCCGACC GCAAGGTGTA
CCCACAGGCA GACATGGTCA TCGTGCACCA CTGGGATATC ATGTCCAACC CTAAGTCACG
CCTCCCACCT TCCCCGAGGC CGCAGGGGCA GCGCTGGATC TGGTTCAACT TGGAGCCACC
CCCTAACTGC CAGCACCTGG AAGCCCTGGA CAGATACTTC AATCTCACCA TGTCCTACCG
CAGCGACTCC GACATCTTCA CGCCCTACGG CTGGCTGGAG CCGTGGTCCG GCCAGCCTGC
CCACCCACCG CTCAACCTCT CGGCCAAGAC CGAGCTGGTG GCCTGGGCGG TGTCCAACTG
GAAGCCGGAC TCAGCCAGGG TGCGCTACTA CCAGAGCCTG CAGGCTCATC TCAAGGTGGA
CGTGTACGGA CGCTCCCACA AGCCCCTGCC CAAGGGGACC ATGATGGAGA CGCTGTCCCG
GTACAAGTTC TACCTGGCCT TCGAGAACTC CTTGCACCCC GACTACATCA CCGAGAAGCT
GTGGAGGAAC GCCCTGGAGG CCTGGGCCGT GCCCGTGGTG CTGGGCCCCA GCAGAAGCAA
CTACGAGAGG TTCCTGCCAC CCGACGCCTT CATCCACGTG GACGACTTCC AGAGCCCCAA
GGACCTGGCC CGGTACCTGC AGGAGCTGGA CAAGGACCAC GCCCGCTACC TGAGCTACTT
TCGCTGGCGG GAGACGCTGC GGCCTCGCTC CTTCAGCTGG GCACTGGATT TCTGCAAGGC
CTGCTGGAAA CTGCAGCAGG AATCCAGGTA CCAGACGGTG
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
dbMHC locus: FUT3
| Summary | Average
Het.+/- std err: | Individual
Count | Founders
Count | Individual
Overlap | Genotype
Conflict |
|---|
| 0.238+/-0.250 | 47 | 47 | 0 | 0 |
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data |  | UNKNOWN | UNKNOWN | YES |
| 
