Skip to main content
NCBI
 dbSNP
PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
transparent GIF
Spacer gif
BUILD 130
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs28362458          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:125/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NG_007482.1:g.11648G>A
NM_000149.3:c.13G>A
NM_001097639.1:c.13G>A
NM_001097640.1:c.13G>A
NM_001097641.1:c.13G>A
NP_000140.1:p.Gly5Ser
NP_001091108.1:p.Gly5Ser
NP_001091109.1:p.Gly5Ser
NP_001091110.1:p.Gly5Ser
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss35033225 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs28362458 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss35033225PGA-UW-FHCRC|FUT3-008458byFreqfwd/TA/Gtcccagatactctgacccatggatcccctggtgcagccaagccacaatggccatggcgcc02/08/0511/02/06125Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs28362458|allelePos=256|totalLen=511|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=125
 CGGGGATTCC AGGAAAGGTC TTGTCTAATA GGTAGAAGGA AGTGGACTCT GGGACAAGGT
 CCCTTTGTTC AAACACCAGC TGTGCTGATT TTTGCTGTGA GTCACTTGGT CTCAGTTTTC
 TCATCTGTGA AACAGGAATA ATAGCAGCTC CTCTCAGGAC TCATGGCCCG GAGCTTTGGT
 AAGCAGGAGA TTGTCATCAA TGACCCTCAC TCCTCTCTCC TCTCTTCCCA GATACTCTGA
 CCCATGGATC CCCTG
 R
 GTGCAGCCAA GCCACAATGG CCATGGCGCC GCTGTCTGGC CGCACTGCTA TTTCAGCTGC
 TGGTGGCTGT GTGTTTCTTC TCCTACCTGC GTGTGTCCCG AGACGATGCC ACTGGATCCC
 CTAGGGCTCC CAGTGGGTCC TCCCGACAGG ACACCACTCC CACCCGCCCC ACCCTCCTGA
 TCCTGCTATG GACATGGCCT TTCCACATCC CTGTGGCTCT GTCCCGCTGT TCAGAGATGG
 TGCCCGGCAC AGCCG

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
AY870341
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source A/A
 A/G
 G/G
 HWP A
 G
ss35033225 PGA_CEPH-PANEL European 46 IG 1.000 1.000
PGA_YORUB-PANEL Sub-Saharan African 48 IG 0.042 0.292 0.667 1.000 0.188 0.812

Summary Average
Het.+/- std err:		 Individual
Count		 Founders
Count		 Individual
Overlap		 Genotype
Conflict
0.173+/-0.238 47 47 0 0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byFreq UNKNOWN UNKNOWN YES

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .