Reference SNP(refSNP) Cluster Report: rs28359762

Reference SNP(refSNP) Cluster Report: rs28359762

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	125/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_004152.2:c.131G>A
NP_004143.1:p.Gly44Asp

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss32479340 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs28359762 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss32479340	EGP_SNPS\|OAZ1-001922	fwd/T	A/G	tgccgctcctaagcctgcacagccgcggcg	cagcagcagtgagaggtaagtgccccgccc	01/06/05	11/02/06	125	Genomic	unknown
ss66858898	EGP_SNPS\|OAZ1_001922	fwd/T	A/G	tgccgctcctaagcctgcacagccgcggcg	cagcagcagtgagaggtaagtgccccgccc	11/09/06	12/16/06	127	Genomic	unknown
ss74907832	ILLUMINA\|ILMN_Human_1M_rs28359762	fwd/T	A/G	tgccgctcctaagcctgcacagccgcggcg	cagcagcagtgagaggtaagtgccccgccc	08/28/07	08/29/07	129	Genomic	unknown

Fasta sequence (Legend)

 TGGCCTGGGC GCAGCATCTA TAAAGGCGGG CGGCGGCAGA GGCGCCATTT TGCGAACGGC
 GAGCAGCGGC GGCGGCGCGG AGAGACGCAG CGGAGGTTTT CCTGGTTTCG GACCCCAGCG
 GCCGGATGGT GAAATCCTCC CTGCAGCGGA TCCTCAATAG CCACTGCTTC GCCAGAGAGA
 AGGAAGGGGA TAAACCCAGC GCCACCATCC ACGCCAGCCG CACCATGCCG CTCCTAAGCC
 TGCACAGCCG CGGCG
 R
 CAGCAGCAGT GAGAGGTAAG TGCCCCGCCC CCGTCCGAAG CTTCCAGAAG CGCCGGCCGC
 GCAGGCCTGC GGGGGGCCGT CCTCGGGGCG CCAGATAGGT TCCCGGCGCG CGAGATCCGC
 CCCTTTGTCA AGGCCAGAAT CGCGCCGGGG ACGAGGTAGG CGCAGGGCGG GCCTGGAGGT
 CCCCCCCGGC CTTAGCAGTG CTCTCGGGGG AGTCGGGTTT GGGGGGCAAG GGTGCGGAGT
 TGGATTTGGG GGGCA

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
AY865622

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss32479340	PDR90	Global	178	IG	0.079	0.022	0.899	0.001	0.090	0.910

ss66858898	HSP_GENO_PANEL		120	IG			1.000			1.000

	CEU_GENO_PANEL	European	120	IG			1.000			1.000

	AAM_GENO_PANEL	African American	122	IG			1.000			1.000

	CHB_GENO_PANEL	Asian	90	IG		0.022	0.978	1.000	0.011	0.989

	YRI_GENO_PANEL	Sub-Saharan African	120	IG			1.000			1.000

	JPT_GENO_PANEL	Asian	90	IG		0.022	0.978	1.000	0.011	0.989

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.042+/-0.139	422	422	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	YES

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Revised: May 25, 2006 1:38 PM .