Reference SNP(refSNP) Cluster Report: rs2296151

Reference SNP(refSNP) Cluster Report: rs2296151

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names
NM_001672.2:c.38T>C
NP_001663.2:p.Val13Ala
NT_028392.5:g.3044310T>C

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss6903667 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2296151 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss3240155	YUSUKE\|IMS-JST050240	fwd/T	A/G	tggctgttggcagtgaagaagcagaggaag	ccagcagggtggccaggagtaagcgggtga	09/05/01	10/10/03	100	Genomic	unknown
ss6903667	SNP500CANCER\|ASIP-02	rev/B	C/T	tcacccgcttactcctggccaccctgctgg	cttcctctgcttcttcactgccaacagcca	02/14/03	04/07/04	113	Genomic	unknown
ss74807209	AFFY\|SNP_M-177664	fwd/T	A/G	tggctgttggcagtgaagaagcagaggaag	ccagcagggtggccaggagtaagcgggtga	08/09/07	08/09/07	128	Genomic	unknown
ss74911216	ILLUMINA\|ILMN_Human_1M_rs2296151	fwd/T	A/G	tggctgttggcagtgaagaagcagaggaag	ccagcagggtggccaggagtaagcgggtga	08/28/07	08/29/07	129	Genomic	unknown
ss102645609	KRIBB_YJKIM\|KHS1104775	fwd/T	A/G	tggctgttggcagtgaagaagcagaggaag	ccagcagggtggccaggagtaagcgggtga	05/21/08	05/21/08	130	Genomic	unknown

Fasta sequence (Legend)

 GAGCCGTGAC CATGGCGGTG GATCCTGGTA GCACCCTGGG AAGCATGCTT GATCTCCTGC
 AGCCCCTCTC CTGGGCCAGA GCCCAGAGGC TAGGTGACTT ACCCACAATA GAGACAGAAG
 GGACATCCAG TAGGTTCACA GAGGAGTTGC TTCTCAGGCT CCTGTCATCT CGGAGCTTCT
 CCTCAGGTGG CAGGTGGCTG TTGGCAGTGA AGAAGCAGAG GAAG
 R
 CCAGCAGGGT GGCCAGGAGT AAGCGGGTGA CATCCATCCC AGGAGGCCTG AGTGGGACAG
 AGAAGGTGGT CAGGTGGGTG GGTCAGGGGT AATGGTARGA GGCCTTCCTG CTTTCTTTGT
 GCTTCTTTGG GCTGGTGTTG TGACCCTGTT AGGCAAGTGT CCTGGTGGAG CTGGAGGATT
 AGCAAGGCTT AGGATG

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_028392.4

dbSNP Blast Analysis

UniGene Cluster ID
432400

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	HWP	A	G
ss3240155	JBIC-allele		1252	AF				0.928	0.072

ss6903667	P1		204	GF			1.000	0.995	0.005

	CAUC1		62	GF				1.000

	AFR1		48	GF				1.000

	HISP1		46	GF				1.000

	PAC1		48	GF			1.000	0.979	0.021

	HapMap-CEU	European	120	IG	1.000			1.000

	HapMap-HCB	Asian	90	IG	1.000			1.000

	HapMap-JPT	Asian	88	IG	0.841	0.159	0.584	0.920	0.080

	HapMap-YRI	Sub-Saharan African	120	IG	1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.033+/-0.124	525	409	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .