Reference SNP(refSNP) Cluster Report: rs2277339

Reference SNP(refSNP) Cluster Report: rs2277339

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/130
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	G/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_000946.2:c.14A>C
NP_000937.1:p.Asp5Ala
NT_029419.11:g.19289375T>G

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss48430162 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2277339 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss3214152	YUSUKE\|IMS-JST074236	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	09/05/01	10/10/03	100	Genomic	unknown
ss23924102	PERLEGEN\|afd4366521	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	08/10/04	09/13/04	123	Genomic	unknown
ss48430162	APPLERA_GI\|hCV25473856	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	10/02/05	11/03/06	126	Genomic	unknown
ss66775515	ILLUMINA\|HumanHap300v1.1_rs2277339	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	11/09/06	11/09/06	127	Genomic	unknown
ss67240797	ILLUMINA\|HumanHap550v1.1_rs2277339	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	11/14/06	11/14/06	127	Genomic	unknown
ss67637472	ILLUMINA\|HumanHap650Yv1.0_rs2277339	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	11/14/06	11/14/06	127	Genomic	unknown
ss69109934	PERLEGEN\|PGP04366521	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	01/30/07	08/14/07	127	Genomic	unknown
ss70719142	ILLUMINA\|HumanHap550v3.0__rs2277339	rev/T	A/C	ggcgagttccgcgctcaatggagacgtttg	ccccaccgagctgcccgagctgcttaaact	04/20/07	03/30/08	130	Genomic	unknown
ss71287398	ILLUMINA\|HumanHap650Yv3.0_rs2277339	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	04/23/07	04/23/07	127	Genomic	unknown
ss75752675	ILLUMINA\|ILMN_Human_1M_rs2277339	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	08/28/07	08/29/07	129	Genomic	unknown
ss79125508	ILLUMINA\|HumanHap300v2.0_rs2277339	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	04/18/07	11/18/07	130	Genomic	unknown
ss84017342	KRIBB_YJKIM\|KHS603064	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	12/04/07	12/06/07	130	Genomic	unknown
ss84106691	HGSV\|Cor19129_SNV_20070510.chr12_55432336	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	12/06/07	12/06/07	130	Genomic	unknown
ss89172930	BCMHGSC_JDW\|JWB-0563928	fwd/B	G/T	agtttaagcagctcgggcagctcggtgggg	caaacgtctccattgagcgcggaactcgcc	02/26/08	02/28/08	129	Genomic	unknown

Fasta sequence (Legend)

 TTTTTTTTAC AGCGTGGCCG CAGGCTGGCT TATTATATCC TCTCTCGGCC CATTTACACC
 TATGAAGTGG TGGGGCGGGC TCGAGAGAGC AAATGAAGGC GCGCGGCACA AAGCCTGGTG
 CACAGAAGGC GCTTCATATT GTCATTCTAA GGACACCCCG CCTCCAACCT CCTCACACTC
 CGCTCCCGAA CCCATTCCTC GCCTCCATCA CCTCCACCGT AGTTGAGCCA GCGATAGTAC
 TGAGAGTAGG GAAAGAGCCT CCGGTAATAA AGTTTAAGCA GCTCGGGCAG CTCGGTGGGG
 K
 CAAACGTCTC CATTGAGCGC GGAACTCGCC ACGGTAAGGA TTACCACAGG AATTGGCGGG
 AACAGCACGG CCGGCGGCCC CGCGACTGCG CAGGCGCTTA TGGCCGAGGT CGGCTGTCTG
 ACCCGGCGGC CCGCAGTCCG CCGGGGCCGC CGGGAATTGT AGTTCCCACT TGGTGCGCGC
 GGGGGCTGCG GGAGACGCAG CAGTTTGCGA TCTGCCCACG CGTTCGGGCA CTAGGGCCAC
 CGCTCTTGTG GGCAGAAGGC CGCGTCCATT CCAGGAAGAG GATCTTCTCC GGAAATGTGA

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_009458.1

dbSNP Blast Analysis

UniGene Cluster ID
534339

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	T/T	HWP	G	T
ss23924102	AFD_EUR_PANEL	European	48	IG		0.083	0.917	1.000	0.042	0.958

	AFD_AFR_PANEL	African American	42	IG		0.286	0.714	0.479	0.143	0.857

	AFD_CHN_PANEL	Asian	44	IG		0.364	0.636	0.317	0.182	0.818

ss3214152	JBIC-allele		1478	AF					0.211	0.789

ss48430162	HapMap-CEU	European	118	IG		0.220	0.780	0.343	0.110	0.890

	HapMap-HCB	Asian	86	IG	0.070	0.372	0.558	1.000	0.256	0.744

	HapMap-JPT	Asian	88	IG	0.045	0.250	0.705	0.479	0.170	0.830

	HapMap-YRI	Sub-Saharan African	120	IG	0.017	0.300	0.683	0.584	0.167	0.833

	AGI_ASP population	multiple	76	IG	0.026	0.211	0.763	0.655	0.132	0.868

ss69109934	HapMap-CEU	European	120	GF		1.000			0.500	0.500

	HapMap-HCB	Asian	90	GF		1.000			0.500	0.500

	HapMap-JPT	Asian	90	GF		1.000			0.500	0.500

	HapMap-YRI	Sub-Saharan African	120	GF		1.000			0.500	0.500

Concordant Genotype	Total Sample	G/G	G/T	T/T
ss23924102	62		16	42
ss48430162	1052	34	317	694

RefSNP Genotype Summary	Total Individual	G/G	G/T	T/T
rs2277339	1301	34	332	731

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
150	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10846	CEPH1334.01	r27_ch12_CEU_illumina:human_1m_beadchip
151	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	r27_ch12_CEU_illumina:human_1m_beadchip
157	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	r27_ch12_CEU_illumina:human_1m_beadchip
158	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12145	CEPH1334.11	r27_ch12_CEU_illumina:human_1m_beadchip
159	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r27_ch12_CEU_illumina:human_1m_beadchip
160	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12239	CEPH1334.13	r27_ch12_CEU_illumina:human_1m_beadchip
162	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA07019		71_IND_CHR_12
162	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA07019	CEPH1340.02	r27_ch12_CEU_illumina:human_1m_beadchip
171	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA07022	CEPH1340.11	r27_ch12_CEU_illumina:human_1m_beadchip
172	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA07056	CEPH1340.12	r27_ch12_CEU_illumina:human_1m_beadchip
174	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	r27_ch12_CEU_illumina:human_1m_beadchip
175	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA06991	CEPH1341.02	r27_ch12_CEU_illumina:human_1m_beadchip
184	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA07034	CEPH1341.11	r27_ch12_CEU_illumina:human_1m_beadchip
185	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA07055	CEPH1341.12	r27_ch12_CEU_illumina:human_1m_beadchip
186	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA06993	CEPH1341.13	r27_ch12_CEU_illumina:human_1m_beadchip
187	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	r27_ch12_CEU_illumina:human_1m_beadchip
188	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10851		71_IND_CHR_12
188	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA10851	CEPH1344.01	r27_ch12_CEU_illumina:human_1m_beadchip
199	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12056	CEPH1344.12	r27_ch12_CEU_illumina:human_1m_beadchip
200	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12057	CEPH1344.13	r27_ch12_CEU_illumina:human_1m_beadchip
203	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA07348		71_IND_CHR_12
203	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA07348	CEPH1345.02	r27_ch12_CEU_illumina:human_1m_beadchip
214	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA07345	CEPH1345.13	r27_ch12_CEU_illumina:human_1m_beadchip
215	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10857		71_IND_CHR_12
215	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA10857	CEPH1346.01	r27_ch12_CEU_illumina:human_1m_beadchip
225	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12043	CEPH1346.11	r27_ch12_CEU_illumina:human_1m_beadchip
226	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12044	CEPH1346.12	r27_ch12_CEU_illumina:human_1m_beadchip
229	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10859	CEPH1347.02	r27_ch12_CEU_illumina:human_1m_beadchip
238	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11881	CEPH1347.14	r27_ch12_CEU_illumina:human_1m_beadchip
242	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10854		71_IND_CHR_12
242	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	r27_ch12_CEU_illumina:human_1m_beadchip
252	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11839	CEPH1349.13	r27_ch12_CEU_illumina:human_1m_beadchip
253	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11840	CEPH1349.14	r27_ch12_CEU_illumina:human_1m_beadchip
254	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	r27_ch12_CEU_illumina:human_1m_beadchip
255	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	r27_ch12_CEU_illumina:human_1m_beadchip
263	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11830	CEPH1350.11	r27_ch12_CEU_illumina:human_1m_beadchip
264	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11831	CEPH1350.12	r27_ch12_CEU_illumina:human_1m_beadchip
265	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11832	CEPH1350.13	r27_ch12_CEU_illumina:human_1m_beadchip
335	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12707	CEPH1358.01	r27_ch12_CEU_illumina:human_1m_beadchip
345	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA12717	CEPH1358.12	r27_ch12_CEU_illumina:human_1m_beadchip
348	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10860		71_IND_CHR_12
348	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r27_ch12_CEU_illumina:human_1m_beadchip
349	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10861		71_IND_CHR_12
349	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10861	CEPH1362.02	r27_ch12_CEU_illumina:human_1m_beadchip
360	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11992	CEPH1362.13	r27_ch12_CEU_illumina:human_1m_beadchip
361	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11993	CEPH1362.14	r27_ch12_CEU_illumina:human_1m_beadchip
362	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11994	CEPH1362.15	r27_ch12_CEU_illumina:human_1m_beadchip
363	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	r27_ch12_CEU_illumina:human_1m_beadchip
366	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	r27_ch12_CEU_illumina:human_1m_beadchip
374	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12234	CEPH1375.12	r27_ch12_CEU_illumina:human_1m_beadchip
399	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10830		71_IND_CHR_12
399	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	r27_ch12_CEU_illumina:human_1m_beadchip
400	ss23924102	T/T	PERLEGEN	AFD_EUR_PANEL	NA10831		71_IND_CHR_12
400	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10831	CEPH1408.02	r27_ch12_CEU_illumina:human_1m_beadchip
409	ss48430162	N/N	CSHL-HAPMAP	HapMap-CEU	NA12236	CEPH1408.11	r27_ch12_CEU_illumina:human_1m_beadchip
410	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	r27_ch12_CEU_illumina:human_1m_beadchip
411	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12156	CEPH1408.13	r27_ch12_CEU_illumina:human_1m_beadchip
429	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10835	CEPH1416.01	r27_ch12_CEU_illumina:human_1m_beadchip
438	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	r27_ch12_CEU_illumina:human_1m_beadchip
439	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12249	CEPH1416.12	r27_ch12_CEU_illumina:human_1m_beadchip
456	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA10838	CEPH1420.01	r27_ch12_CEU_illumina:human_1m_beadchip
467	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	r27_ch12_CEU_illumina:human_1m_beadchip
524	ss48430162	G/G	CSHL-HAPMAP	HapMap-CEU	NA12740	CEPH1444.02	r27_ch12_CEU_illumina:human_1m_beadchip
537	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12752	CEPH1447.01	r27_ch12_CEU_illumina:human_1m_beadchip
545	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12760	CEPH1447.09	r27_ch12_CEU_illumina:human_1m_beadchip
546	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12761	CEPH1447.10	r27_ch12_CEU_illumina:human_1m_beadchip
548	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12763	CEPH1447.12	r27_ch12_CEU_illumina:human_1m_beadchip
566	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12802	CEPH1454.02	r27_ch12_CEU_illumina:human_1m_beadchip
576	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12812	CEPH1454.12	r27_ch12_CEU_illumina:human_1m_beadchip
577	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12813	CEPH1454.13	r27_ch12_CEU_illumina:human_1m_beadchip
578	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	r27_ch12_CEU_illumina:human_1m_beadchip
579	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12815	CEPH1454.15	r27_ch12_CEU_illumina:human_1m_beadchip
610	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12864	CEPH1459.01	r27_ch12_CEU_illumina:human_1m_beadchip
611	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12865	CEPH1459.02	r27_ch12_CEU_illumina:human_1m_beadchip
618	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	r27_ch12_CEU_illumina:human_1m_beadchip
619	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12873	CEPH1459.10	r27_ch12_CEU_illumina:human_1m_beadchip
620	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12874	CEPH1459.11	r27_ch12_CEU_illumina:human_1m_beadchip
621	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12875	CEPH1459.12	r27_ch12_CEU_illumina:human_1m_beadchip
623	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12878	CEPH1463.02	r27_ch12_CEU_illumina:human_1m_beadchip
636	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	r27_ch12_CEU_illumina:human_1m_beadchip
637	ss48430162	T/T	CSHL-HAPMAP	HapMap-CEU	NA12892	CEPH1463.16	r27_ch12_CEU_illumina:human_1m_beadchip
5132	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18500	YOR004.01	r27_ch12_YRI_illumina:human_1m_beadchip
5133	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA18502	YOR004.02	r27_ch12_YRI_illumina:human_1m_beadchip
5135	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19128	YOR077.03	r27_ch12_YRI_illumina:human_1m_beadchip
5138	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19130	YOR101.03	r27_ch12_YRI_illumina:human_1m_beadchip
5139	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA19100	YOR105.01	r27_ch12_YRI_illumina:human_1m_beadchip
5140	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19099	YOR105.02	r27_ch12_YRI_illumina:human_1m_beadchip
5141	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19098	YOR105.03	r27_ch12_YRI_illumina:human_1m_beadchip
5142	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19194	YOR112.01	r27_ch12_YRI_illumina:human_1m_beadchip
5143	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19193	YOR112.02	r27_ch12_YRI_illumina:human_1m_beadchip
5145	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19240	YOR117.01	r27_ch12_YRI_illumina:human_1m_beadchip
5147	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19239	YOR117.03	r27_ch12_YRI_illumina:human_1m_beadchip
5148	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	r27_ch12_CHB_illumina:human_1m_beadchip
5149	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	r27_ch12_CHB_illumina:human_1m_beadchip
5152	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18532	CH18532	r27_ch12_CHB_illumina:human_1m_beadchip
5153	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18561	CH18561	r27_ch12_CHB_illumina:human_1m_beadchip
5154	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18562	CH18562	r27_ch12_CHB_illumina:human_1m_beadchip
5155	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18537	CH18537	r27_ch12_CHB_illumina:human_1m_beadchip
5157	ss48430162	N/N	CSHL-HAPMAP	HapMap-HCB	NA18540	CH18540	r27_ch12_CHB_illumina:human_1m_beadchip
5159	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	r27_ch12_CHB_illumina:human_1m_beadchip
5164	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18550	CH18550	r27_ch12_CHB_illumina:human_1m_beadchip
5166	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18552	CH18552	r27_ch12_CHB_illumina:human_1m_beadchip
5167	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18611	CH18611	r27_ch12_CHB_illumina:human_1m_beadchip
5168	ss48430162	G/G	CSHL-HAPMAP	HapMap-HCB	NA18555	CH18555	r27_ch12_CHB_illumina:human_1m_beadchip
5170	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18566	CH18566	r27_ch12_CHB_illumina:human_1m_beadchip
5171	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	r27_ch12_CHB_illumina:human_1m_beadchip
5174	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	r27_ch12_CHB_illumina:human_1m_beadchip
5175	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	r27_ch12_CHB_illumina:human_1m_beadchip
5177	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18594	CH18594	r27_ch12_CHB_illumina:human_1m_beadchip
5178	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18622	CH18622	r27_ch12_CHB_illumina:human_1m_beadchip
5179	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18573	CH18573	r27_ch12_CHB_illumina:human_1m_beadchip
5182	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	r27_ch12_CHB_illumina:human_1m_beadchip
5183	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18624	CH18624	r27_ch12_CHB_illumina:human_1m_beadchip
5184	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18579	CH18579	r27_ch12_CHB_illumina:human_1m_beadchip
5185	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18632	CH18632	r27_ch12_CHB_illumina:human_1m_beadchip
5187	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18633	CH18633	r27_ch12_CHB_illumina:human_1m_beadchip
5189	ss48430162	G/G	CSHL-HAPMAP	HapMap-HCB	NA18592	CH18592	r27_ch12_CHB_illumina:human_1m_beadchip
5190	ss48430162	T/T	CSHL-HAPMAP	HapMap-HCB	NA18636	CH18636	r27_ch12_CHB_illumina:human_1m_beadchip
5191	ss48430162	G/G	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	r27_ch12_CHB_illumina:human_1m_beadchip
5194	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18940	JA18940	r27_ch12_JPT_illumina:human_1m_beadchip
5195	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	r27_ch12_JPT_illumina:human_1m_beadchip
5197	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18947	JA18947	r27_ch12_JPT_illumina:human_1m_beadchip
5198	ss48430162	G/G	CSHL-HAPMAP	HapMap-JPT	NA18944	JA18944	r27_ch12_JPT_illumina:human_1m_beadchip
5199	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	r27_ch12_JPT_illumina:human_1m_beadchip
5200	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	r27_ch12_JPT_illumina:human_1m_beadchip
5201	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	r27_ch12_JPT_illumina:human_1m_beadchip
5202	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18952	JA18952	r27_ch12_JPT_illumina:human_1m_beadchip
5204	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	r27_ch12_JPT_illumina:human_1m_beadchip
5205	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18953	JA18953	r27_ch12_JPT_illumina:human_1m_beadchip
5206	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18968	JA18968	r27_ch12_JPT_illumina:human_1m_beadchip
5208	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18969	JA18969	r27_ch12_JPT_illumina:human_1m_beadchip
5210	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18961	JA18961	r27_ch12_JPT_illumina:human_1m_beadchip
5212	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r27_ch12_JPT_illumina:human_1m_beadchip
5213	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18973	JA18973	r27_ch12_JPT_illumina:human_1m_beadchip
5214	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18966	JA18966	r27_ch12_JPT_illumina:human_1m_beadchip
5217	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	r27_ch12_JPT_illumina:human_1m_beadchip
5218	ss48430162	G/G	CSHL-HAPMAP	HapMap-JPT	NA18978	JA18978	r27_ch12_JPT_illumina:human_1m_beadchip
5219	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18970	JA18970	r27_ch12_JPT_illumina:human_1m_beadchip
5221	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18995	JA18995	r27_ch12_JPT_illumina:human_1m_beadchip
5223	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	r27_ch12_JPT_illumina:human_1m_beadchip
5224	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18974	JA18974	r27_ch12_JPT_illumina:human_1m_beadchip
5225	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	r27_ch12_JPT_illumina:human_1m_beadchip
5226	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	r27_ch12_JPT_illumina:human_1m_beadchip
5227	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18991	JA18991	r27_ch12_JPT_illumina:human_1m_beadchip
5228	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18994	JA18994	r27_ch12_JPT_illumina:human_1m_beadchip
5229	ss48430162	N/N	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	r27_ch12_JPT_illumina:human_1m_beadchip
5230	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18997	JA18997	r27_ch12_JPT_illumina:human_1m_beadchip
5231	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	r27_ch12_JPT_illumina:human_1m_beadchip
5232	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	r27_ch12_JPT_illumina:human_1m_beadchip
5233	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA19005	JA19005	r27_ch12_JPT_illumina:human_1m_beadchip
5234	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA18999	JA18999	r27_ch12_JPT_illumina:human_1m_beadchip
5235	ss48430162	T/T	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	r27_ch12_JPT_illumina:human_1m_beadchip
5237	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18501	YOR004.03	r27_ch12_YRI_illumina:human_1m_beadchip
5238	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18503	YOR005.01	r27_ch12_YRI_illumina:human_1m_beadchip
5239	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18505	YOR005.02	r27_ch12_YRI_illumina:human_1m_beadchip
5240	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	r27_ch12_YRI_illumina:human_1m_beadchip
5241	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18506	YOR009.01	r27_ch12_YRI_illumina:human_1m_beadchip
5242	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18508	YOR009.02	r27_ch12_YRI_illumina:human_1m_beadchip
5243	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18507	YOR009.03	r27_ch12_YRI_illumina:human_1m_beadchip
5245	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	r27_ch12_YRI_illumina:human_1m_beadchip
5247	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18515	YOR013.01	r27_ch12_YRI_illumina:human_1m_beadchip
5248	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	r27_ch12_YRI_illumina:human_1m_beadchip
5249	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18516	YOR013.03	r27_ch12_YRI_illumina:human_1m_beadchip
5250	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA18521	YOR016.01	r27_ch12_YRI_illumina:human_1m_beadchip
5251	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA18523	YOR016.02	r27_ch12_YRI_illumina:human_1m_beadchip
5252	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA18522	YOR016.03	r27_ch12_YRI_illumina:human_1m_beadchip
5255	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18871	YOR017.03	r27_ch12_YRI_illumina:human_1m_beadchip
5256	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	r27_ch12_YRI_illumina:human_1m_beadchip
5257	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	r27_ch12_YRI_illumina:human_1m_beadchip
5258	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18853	YOR018.03	r27_ch12_YRI_illumina:human_1m_beadchip
5259	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18857	YOR023.01	r27_ch12_YRI_illumina:human_1m_beadchip
5260	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18855	YOR023.02	r27_ch12_YRI_illumina:human_1m_beadchip
5261	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA18856	YOR023.03	r27_ch12_YRI_illumina:human_1m_beadchip
5265	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18914	YOR028.01	r27_ch12_YRI_illumina:human_1m_beadchip
5266	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	r27_ch12_YRI_illumina:human_1m_beadchip
5268	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19094	YOR040.01	r27_ch12_YRI_illumina:human_1m_beadchip
5269	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19093	YOR040.02	r27_ch12_YRI_illumina:human_1m_beadchip
5270	ss48430162	N/N	CSHL-HAPMAP	HapMap-YRI	NA19092	YOR040.03	r27_ch12_YRI_illumina:human_1m_beadchip
5271	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19103	YOR042.01	r27_ch12_YRI_illumina:human_1m_beadchip
5272	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19102	YOR042.02	r27_ch12_YRI_illumina:human_1m_beadchip
5273	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19101	YOR042.03	r27_ch12_YRI_illumina:human_1m_beadchip
5275	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19137	YOR043.02	r27_ch12_YRI_illumina:human_1m_beadchip
5278	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19201	YOR045.02	r27_ch12_YRI_illumina:human_1m_beadchip
5281	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19172	YOR047.02	r27_ch12_YRI_illumina:human_1m_beadchip
5282	ss48430162	G/G	CSHL-HAPMAP	HapMap-YRI	NA19171	YOR047.03	r27_ch12_YRI_illumina:human_1m_beadchip
5285	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19203	YOR048.03	r27_ch12_YRI_illumina:human_1m_beadchip
5286	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	r27_ch12_YRI_illumina:human_1m_beadchip
5287	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19209	YOR050.02	r27_ch12_YRI_illumina:human_1m_beadchip
5288	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19210	YOR050.03	r27_ch12_YRI_illumina:human_1m_beadchip
5289	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19208	YOR051.01	r27_ch12_YRI_illumina:human_1m_beadchip
5290	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19206	YOR051.02	r27_ch12_YRI_illumina:human_1m_beadchip
5292	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19161	YOR056.01	r27_ch12_YRI_illumina:human_1m_beadchip
5294	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19160	YOR056.03	r27_ch12_YRI_illumina:human_1m_beadchip
5295	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	r27_ch12_YRI_illumina:human_1m_beadchip
5296	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	r27_ch12_YRI_illumina:human_1m_beadchip
5298	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19120	YOR060.01	r27_ch12_YRI_illumina:human_1m_beadchip
5299	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19116	YOR060.02	r27_ch12_YRI_illumina:human_1m_beadchip
5300	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19119	YOR060.03	r27_ch12_YRI_illumina:human_1m_beadchip
5304	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19154	YOR072.01	r27_ch12_YRI_illumina:human_1m_beadchip
5305	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19152	YOR072.02	r27_ch12_YRI_illumina:human_1m_beadchip
5306	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19153	YOR072.03	r27_ch12_YRI_illumina:human_1m_beadchip
5308	ss48430162	T/T	CSHL-HAPMAP	HapMap-YRI	NA19143	YOR074.02	r27_ch12_YRI_illumina:human_1m_beadchip

Genotype data submitted for	1316	samples from	1301	individuals	Individual with multiple genotypes submission:	15

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .