Reference SNP(refSNP) Cluster Report: rs2069885

Reference SNP(refSNP) Cluster Report: rs2069885

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	96/130
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_000590.1:c.350C>T
NP_000581.1:p.Thr117Met
NT_034772.5:g.37643178G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss71645990 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2069885 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss2982016	PGA-UW-FHCRC\|IL9-005738	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	05/18/01	04/07/04	96	Genomic	unknown
ss17067099	CSHL-HAPMAP\|CSHL-HuAA-200402.chr5.NT_034772.5_37643178	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	02/17/04	10/26/06	120	Genomic	unknown
ss24665721	PERLEGEN\|afd0832884	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	08/10/04	09/13/04	123	Genomic	unknown
ss44610162	ABI\|hCV3275199	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	07/19/05	11/03/06	126	Genomic	unknown
ss52087800	PGA-UW-FHCRC\|IL9_005738	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	04/28/06	08/14/07	127	Genomic	unknown
ss65726117	ILLUMINA\|Human1-rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	10/10/06	10/10/06	127	Genomic	unknown
ss66835128	ILLUMINA\|HumanHap300v1.1_rs2069885	fwd/T	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	11/09/06	11/09/06	127	Genomic	unknown
ss67221849	ILLUMINA\|HumanHap550v1.1_rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	11/14/06	11/14/06	127	Genomic	unknown
ss67616266	ILLUMINA\|HumanHap650Yv1.0_rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	11/14/06	11/14/06	127	Genomic	unknown
ss68950815	PERLEGEN\|PGP00832884	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	01/30/07	01/30/07	127	Genomic	unknown
ss70700139	ILLUMINA\|HumanHap550v3.0__rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	04/20/07	03/30/08	130	Genomic	unknown
ss71266160	ILLUMINA\|HumanHap650Yv3.0_rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	04/23/07	04/23/07	127	Genomic	unknown
ss71645990	SI_EXO\|NT_034772.5_37643178	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	05/07/07	03/31/08	127	Genomic	unknown
ss75895582	ILLUMINA\|ILMN_Human_1M_rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	08/28/07	08/29/07	129	Genomic	unknown
ss76866154	CGM_KYOTO\|720361	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	09/12/07	09/12/07	129	cDNA	unknown
ss79112144	ILLUMINA\|HumanHap300v2.0_rs2069885	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	04/18/07	11/18/07	130	Genomic	unknown
ss83963906	KRIBB_YJKIM\|KHS585977	fwd/B	C/T	tttcctgtgaacagccatgcaaccaaacca	ggcaggcaacgcgctgacatttctgaagag	12/04/07	12/06/07	130	Genomic	unknown
ss109441159	1000GENOMES\|CEU.trio.12.15.2008_1369509_chr5_135256064	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	12/15/08	12/16/08	130	Genomic	unknown
ss113314532	1000GENOMES\|NA19240_2008_12_16_1230869_chr5_135256064	rev/T	A/G	ctcttcagaaatgtcagcgcgttgcctgcc	tggtttggttgcatggctgttcacaggaaa	12/18/08	12/18/08	130	Genomic	unknown

Fasta sequence (Legend)

 AAAGACAACC TAAAAGGATA ATGATACAAT TTTAGGCCTC AAAGAGTCCC CAGAAAAGGC
 TTTCTCTAAT GCAGAGATTT AGGGCCACTT AATAGGGGTG TGTGTGTGTG TGTGTGTGTG
 TGTGTGTGTG TGTGTGTGTG TGTAAAGACC CCTGAAATCC AATTTGAGGT CAACCACCTA
 TGCTGTCTTT ACACCACATG AGCTAGCCTG GACCTGCCCA CCTATTTGCT CTGTGTCTCA
 AGCCACTTCC CTTCCCATCC CCACAATCCT CACCACCGAC TCTGGCTCTT GGCAGGTAGG
 CTTCTGGGGC TGCTTGGCTC TACATCATTT GAGTCACTCT GTCCTTATCA ACTTTCATCC
 CCACAGTATT TTTCCTGTGA ACAGCCATGC AACCAAACCA
 Y
 GGCAGGCAAC GCGCTGACAT TTCTGAAGAG TCTTCTGGAA ATTTTCCAGA AAGAAAAGAT
 GAGAGGGATG AGAGGCAAGA TATGAAGATG AAATATTATT TATCCTATTT ATTAAATTTA
 AAAAGCTTTC TCTTTAAGTT GCTACAATTT AAAAATCAAG TAAGCTACTC TAAATCAGTA
 TCAGTTGTGA TTATTTGTTT AACATTGTAT GTCTTTATTT TGAAATAAAT ACATATGTGG
 AAAAAACAAC ATGAGCTGGT CTCTTGGCAA TTATTCATTT CTTGCTGCTC AGAACAAAGA
 AAGCTACAAG TGTTGTTAAG GGGAAGAATA GATCAGAGAC TCCTGTAGGA GTCTCTGTGA
 TAAGACTCCT GATGCTGAAT ACAGACCCTC AGGCTCATAG

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NT_034772.5

dbSNP Blast Analysis

UniGene Cluster ID
960

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss24665721	AFD_EUR_PANEL	European	48	IG	0.708	0.250	0.042	0.655	0.833	0.167

	AFD_AFR_PANEL	African American	46	IG	0.826	0.130	0.043	0.150	0.891	0.109

	AFD_CHN_PANEL	Asian	48	IG	1.000				1.000

ss2982016	PGA-AFRICAN-PANEL	African American	46	IG	0.783	0.174	0.043	0.273	0.870	0.130

	PGA-EUROPEAN-PANEL	European	42	IG	0.762	0.238		0.584	0.881	0.119

ss44610162	HapMap-CEU	European	120	IG	0.783	0.217		0.371	0.892	0.108

	HapMap-HCB	Asian	90	IG	1.000				1.000

	HapMap-JPT	Asian	90	IG	1.000				1.000

	HapMap-YRI	Sub-Saharan African	120	IG	0.717	0.283		0.251	0.858	0.142

ss52087800	HSP_GENO_PANEL		120	IG	0.867	0.133		0.584	0.933	0.067

	YRI_GENO_PANEL	Sub-Saharan African	120	IG	0.717	0.283		0.251	0.858	0.142

	AAM_GENO_PANEL	African American	120	IG	0.750	0.233	0.017	1.000	0.867	0.133

	CEU_GENO_PANEL	European	120	IG	0.783	0.217		0.371	0.892	0.108

	CHB_GENO_PANEL	Asian	90	IG	1.000				1.000

	JPT_GENO_PANEL	Asian	78	IG	1.000				1.000

ss68950815	HapMap-CEU	European	120	GF	1.000				1.000

	HapMap-HCB	Asian	90	GF	1.000				1.000

	HapMap-JPT	Asian	90	GF	1.000				1.000

	HapMap-YRI	Sub-Saharan African	120	GF	1.000				1.000

ss71645990	HapMap-CEU	European	120	IG	0.783	0.217			0.892	0.108

	HapMap-HCB	Asian	90	IG	1.000				1.000

	HapMap-JPT	Asian	90	IG	1.000				1.000

	HapMap-YRI	Sub-Saharan African	120	IG	0.717	0.283			0.858	0.142

Concordant Genotype	Total Sample	C/C	C/T	T/T
ss24665721	70
ss2982016	46	34	8	1
ss52087800	302	271	22	1
ss71645990	1089

RefSNP Genotype Summary	Total Individual	C/C	C/T	T/T
rs2069885	1310	305	30	2

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
150	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA10846	CEPH1334.01	r27_ch5_CEU_imsut-riken:genotyping
158	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12145	NA12145	IL9-CEU-021307
158	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12145	NA12145	IL9-CEU-040506
158	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12145	CEPH1334.11	r27_ch5_CEU_imsut-riken:genotyping
162	ss2982016	C/T	PGA-UW-FHCRC	PGA-EUROPEAN-PANEL	E023		IL9-EUROPEAN-032401
162	ss24665721	A/G	PERLEGEN	AFD_EUR_PANEL	NA07019		71_IND_CHR_5
162	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA07019	CEPH1340.02	r27_ch5_CEU_imsut-riken:genotyping
171	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA07022	NA07022	IL9-CEU-021307
171	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA07022	NA07022	IL9-CEU-040506
171	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA07022	CEPH1340.11	r27_ch5_CEU_imsut-riken:genotyping
172	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA07056	NA07056	IL9-CEU-021307
172	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA07056	NA07056	IL9-CEU-040506
172	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA07056	CEPH1340.12	r27_ch5_CEU_imsut-riken:genotyping
200	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12057	NA12057	IL9-CEU-021307
200	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12057	NA12057	IL9-CEU-040506
200	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12057	CEPH1344.13	r27_ch5_CEU_imsut-riken:genotyping
239	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA11882	NA11882	IL9-CEU-021307
239	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA11882	NA11882	IL9-CEU-040506
239	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA11882	CEPH1347.15	r27_ch5_CEU_imsut-riken:genotyping
254	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	r27_ch5_CEU_imsut-riken:genotyping
262	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA11829	NA11829	IL9-CEU-021307
262	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA11829	NA11829	IL9-CEU-040506
262	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA11829	CEPH1350.10	r27_ch5_CEU_imsut-riken:genotyping
410	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12155	NA12155	IL9-CEU-021307
410	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12155	NA12155	IL9-CEU-040506
410	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	r27_ch5_CEU_imsut-riken:genotyping
438	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12248	NA12248	IL9-CEU-021307
438	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12248	NA12248	IL9-CEU-040506
438	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	r27_ch5_CEU_imsut-riken:genotyping
457	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA10839	CEPH1420.02	r27_ch5_CEU_imsut-riken:genotyping
464	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12003	NA12003	IL9-CEU-021307
464	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12003	NA12003	IL9-CEU-040506
464	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	r27_ch5_CEU_imsut-riken:genotyping
467	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12006	NA12006	IL9-CEU-021307
467	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12006	NA12006	IL9-CEU-040506
467	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	r27_ch5_CEU_imsut-riken:genotyping
536	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12751	NA12751	IL9-CEU-021307
536	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12751	NA12751	IL9-CEU-040506
536	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12751	CEPH1444.14	r27_ch5_CEU_imsut-riken:genotyping
619	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12873	NA12873	IL9-CEU-021307
619	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12873	NA12873	IL9-CEU-040506
619	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12873	CEPH1459.10	r27_ch5_CEU_imsut-riken:genotyping
636	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12891	NA12891	IL9-CEU-021307
636	ss52087800	C/T	PGA-UW-FHCRC	CEU_GENO_PANEL	NA12891	NA12891	IL9-CEU-040506
636	ss71645990	A/G	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	r27_ch5_CEU_imsut-riken:genotyping
5138	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19130	NA19130	IL9-YRI-021307
5138	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19130	NA19130	IL9-YRI-040506
5138	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19130	YOR101.03	r27_ch5_YRI_illumina:human_1m_beadchip
5140	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19099	NA19099	IL9-YRI-021307
5140	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19099	NA19099	IL9-YRI-040506
5140	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19099	YOR105.02	r27_ch5_YRI_illumina:human_1m_beadchip
5145	ss71645990	A/A	CSHL-HAPMAP	HapMap-YRI	NA19240	YOR117.01	r27_ch5_YRI_illumina:human_1m_beadchip
5146	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19238	NA19238	IL9-YRI-021307
5146	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19238	NA19238	IL9-YRI-040506
5146	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19238	YOR117.02	r27_ch5_YRI_illumina:human_1m_beadchip
5147	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19239	NA19239	IL9-YRI-021307
5147	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19239	NA19239	IL9-YRI-040506
5147	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19239	YOR117.03	r27_ch5_YRI_illumina:human_1m_beadchip
5238	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18503	YOR005.01	r27_ch5_YRI_illumina:human_1m_beadchip
5239	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18505	NA18505	IL9-YRI-021307
5239	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18505	NA18505	IL9-YRI-040506
5239	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18505	YOR005.02	r27_ch5_YRI_illumina:human_1m_beadchip
5240	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18504	NA18504	IL9-YRI-021307
5240	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18504	NA18504	IL9-YRI-040506
5240	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	r27_ch5_YRI_illumina:human_1m_beadchip
5245	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18858	NA18858	IL9-YRI-021307
5245	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18858	NA18858	IL9-YRI-040506
5245	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	r27_ch5_YRI_illumina:human_1m_beadchip
5256	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	r27_ch5_YRI_illumina:human_1m_beadchip
5258	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18853	NA18853	IL9-YRI-021307
5258	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18853	NA18853	IL9-YRI-040506
5258	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18853	YOR018.03	r27_ch5_YRI_illumina:human_1m_beadchip
5265	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18914	YOR028.01	r27_ch5_YRI_illumina:human_1m_beadchip
5266	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18912	NA18912	IL9-YRI-021307
5266	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18912	NA18912	IL9-YRI-040506
5266	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	r27_ch5_YRI_illumina:human_1m_beadchip
5267	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18913	NA18913	IL9-YRI-021307
5267	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA18913	NA18913	IL9-YRI-040506
5267	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	r27_ch5_YRI_illumina:human_1m_beadchip
5271	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19103	YOR042.01	r27_ch5_YRI_illumina:human_1m_beadchip
5273	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19101	NA19101	IL9-YRI-021307
5273	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19101	NA19101	IL9-YRI-040506
5273	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19101	YOR042.03	r27_ch5_YRI_illumina:human_1m_beadchip
5275	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19137	NA19137	IL9-YRI-021307
5275	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19137	NA19137	IL9-YRI-040506
5275	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19137	YOR043.02	r27_ch5_YRI_illumina:human_1m_beadchip
5281	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19172	NA19172	IL9-YRI-021307
5281	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19172	NA19172	IL9-YRI-040506
5281	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19172	YOR047.02	r27_ch5_YRI_illumina:human_1m_beadchip
5287	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19209	NA19209	IL9-YRI-021307
5287	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19209	NA19209	IL9-YRI-040506
5287	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19209	YOR050.02	r27_ch5_YRI_illumina:human_1m_beadchip
5292	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19161	YOR056.01	r27_ch5_YRI_illumina:human_1m_beadchip
5294	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19160	NA19160	IL9-YRI-021307
5294	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19160	NA19160	IL9-YRI-040506
5294	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19160	YOR056.03	r27_ch5_YRI_illumina:human_1m_beadchip
5304	ss71645990	A/A	CSHL-HAPMAP	HapMap-YRI	NA19154	YOR072.01	r27_ch5_YRI_illumina:human_1m_beadchip
5305	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19152	NA19152	IL9-YRI-021307
5305	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19152	NA19152	IL9-YRI-040506
5305	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19152	YOR072.02	r27_ch5_YRI_illumina:human_1m_beadchip
5306	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19153	NA19153	IL9-YRI-021307
5306	ss52087800	C/T	PGA-UW-FHCRC	YRI_GENO_PANEL	NA19153	NA19153	IL9-YRI-040506
5306	ss71645990	A/G	CSHL-HAPMAP	HapMap-YRI	NA19153	YOR072.03	r27_ch5_YRI_illumina:human_1m_beadchip

Genotype data submitted for	1580	samples from	1310	individuals	Individual with multiple genotypes submission:	255

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

Validated by: PERLEGEN

UNKNOWN

YES

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Revised: May 25, 2006 1:38 PM .