| RefSNP | | Organism: | human (Homo sapiens) | | Molecule Type: | Genomic | | Created/Updated in build: | 89/130 | | Map to Genome Build: | 36.3 |
| | Allele | | Variation Class: | SNP:
single nucleotide polymorphism | | RefSNP Alleles: | C/T | | Ancestral Allele: | Not available | | Clinical Association: | unknown |
| | HGVS Names | | NM_000136.2:c.77C>T | | NP_000127.2:p.Ser26Phe | | NT_008470.18:g.5332702G>A |
| |
SNP Details are organized in the following sections:
The submission ss76897562 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1800361 during BLAST analysis for the current build.
NCBI
Assay ID | Handle|Submitter ID | Validation
Status | ss to rs
Orientation
/Strand | Alleles | 5' Near Seq 30 bp | 3' Near Seq 30 bp | Entry
Date | Update
Date | Build
Added | Molecule
Type | Freq
Warning | Ancestral
Allele | Success
Rate |
|---|
| ss2420439 | HGBASE|SNP000003083 |  | fwd/B | C/T | aagctttctgtatgggatcaggctt | cactttggaaacccagcaagacacc | 11/07/00 | 10/10/03 | 89 | Genomic | | | unknown | | ss74817092 | AFFY|SNP_M-314676 | | fwd/B | C/T | tgcagaagctttctgtatgggatcaggctt | cactttggaaacccagcaagacacctgtct | 08/09/07 | 08/09/07 | 128 | Genomic | | | unknown | | ss76897562 | SI_EXO|NT_008470.18_5332702 | | rev/T | A/G | agacaggtgtcttgctgggtttccaaagtg | aagcctgatcccatacagaaagcttctgca | 09/20/07 | 09/20/07 | 129 | Genomic | | | unknown | | ss86344169 | CANCER-GENOME|27172 | | rev/T | A/G | agacaggtgtcttgctgggtttccaaagtg | aagcctgatcccatacagaaagcttctgca | 01/25/08 | 01/25/08 | 129 | Genomic | | | unknown |
>gnl|dbSNP|rs1800361|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=129 AATTAGCGTG TGCCTGTGGA GGTATAAAGA CTTCTAGCCT AATGATAGTA TCATGATAAA
AAGTTCAGAT GGTAAAAATT GGAGCTCCAG CTGGATGACA TATTTTATAA CAATTCAAAG
ATGGCTCCAG CATAGAAGCC ATGCTATTTT AGTTCTTTGT AATCCCTCCT TCACCCATCA
ATGGGTCGTG AAGGCACTGA TAAAAGAGCC TTTTAGAAAT GCTTCTATTT GTTCCCTTTC
TTACAGATTT AATGTGTGCC GACCATTTCC TTCAGTGCTG GACAGGCTGC TGTGAAGGGA
CATCACCTTT TCGCTTTTTC CAAGATGGCT CAAGATTCAG TAGATCTTTC TTGTGATTAT
CAGTTTTGGA TGCAGAAGCT TTCTGTATGG GATCAGGCTT
Y
CACTTTGGAA ACCCAGCAAG ACACCTGTCT TCACGTGGCT CAGTTCCAGG AGTTCCTAAG
GAAGATGTAT GAAGCCTTGA AAGAGATGGT AAGTAGTGGA CCAGAATAAT GAAATTATTT
TCTGACTTCA GGGACTCTAC CAGATTTCAC CAAGACAGAA TGCCACCCAG AATCGGGACT
TGTGGTATTG ACTGAAGTGC CGATGGATTA GGAAGACAAA TTACTCAAGA GCTGGTTTCC
TAGTCTCCGA TTTATTATAT TATTATAATT TCTTCTTGAG TAGCTGTATT GTTACATGAC
ACTTCCTGAC CAAGCAAGTT GTTCTTAAAT AATCAAGATT TCATGCTTGT TGTCAAGTAG
TAAATGGGAT TCTTTTGAAG GCCTTTGTGT CCCTTGAATC
GeneView via analysis of contig annotation:
View more variation on this gene (click to hide).
| Assembly |
SNP to Chr |
Chr |
Chr position |
Contig |
Contig position |
Allele |
| Function |
mRNA |
Protein |
| mRNA to Chr |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via analysis of contig annotation: N/A.
GeneView via direct blast against RefSeq sequences (used when no gene model is available):
| Function |
Chr |
mRNA |
Protein |
| SNP to mRNA |
Accession |
Position |
Allele change |
Accession |
Position |
Residue change |
on assembly: is labeled at position on chromosome .
GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A
doesn't map to any assembly.
There is no frequency data.
| Validation status | Marker displays
Mendelian segregation | PCR results confirmed
in multiple reactions | Homozygotes detected
in individual genotype data |  | UNKNOWN | UNKNOWN | UNKNOWN |
| 
