Reference SNP(refSNP) Cluster Report: rs1792778

Reference SNP(refSNP) Cluster Report: rs1792778

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	89/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	G/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_001136112.1:c.116T>G
NM_004347.3:c.77T>G
NP_001129584.1:p.Leu39Trp
NP_004338.3:p.Leu26Trp

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss2658691 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1792778 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss2658691	SC_JCM\|AP002787.1_68389		fwd/B	G/T	tatgtccaaaggtatccttcagaagtggat	ggataacttcgtgataaaccacatgctaaa	11/03/00	10/10/03	89	Genomic			unknown
ss74862073	ILLUMINA\|ILMN_Human_1M_rs1792778		fwd/B	G/T	tatgtccaaaggtatccttcagaagtggat	ggataacttcgtgataaaccacatgctaaa	08/28/07	08/29/07	129	Genomic			unknown

Fasta sequence (Legend)

 TATTTGTTGA AGACATGGTA AGACAGAATG TATTTTCAAG GGTGTTTCAC ATTACAGAGC
 TTTGTCTAAA GCAAGGGCAA AACTCTTTAA GCTGTGCCCA GAGTTGAAGG AGTCTTTATA
 TTTCTGATAG AAGACAGTGG CAAAAAAAAA AGGCGTAAGA ATTTGGAAGC TATGTCCAAA
 GGTATCCTTC AGAAGTGGAT
 K
 GGATAACTTC GTGATAAACC ACATGCTAAA GAACAACGTG GCTGGACAAA CATCTATCCA
 GACCCTAGTA CCTAATACGG ATCAAAAGTC GACCAGTGTA AAAAGTAAGA CTGGATATTT
 TACAATGGAT ATTTCCAATT TTTTAGAATC TGTTCAATTA TAAGTCCCAT GCAGTGACTT
 CTGTGATCCC CCTATCCTCC

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
AP002787 AC027011 AP002363

dbSNP Blast Analysis

UniGene Cluster ID
213327

Population Diversity

	Sample Ascertainment				Genotype Detail		Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	T/T	HWP	T
ss2658691	SC_12_A	Asian	16	IG	1.000		1.000

	SC_12_AA	African American	14	IG	1.000		1.000

	SC_12_C	European	12	IG	1.000		1.000

	HapMap-CEU	European	120	IG	1.000		1.000

	HapMap-HCB	Asian	86	IG	1.000		1.000

	HapMap-JPT	Asian	82	IG	1.000		1.000

	HapMap-YRI	Sub-Saharan African	112	IG	1.000		1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
		559	434	2	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .