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BUILD 130
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Reference SNP(refSNP) Cluster Report: rs17183529          
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:123/130
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_020996.1:c.188C>T
NP_066276.2:p.Ala63Val
NT_009759.15:g.4408810G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss23134700 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs17183529 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss23134700EGP_SNPS|FGF6-002176byFreqfwd/BC/Tgctggggcaccctgctgtccaggtctcgcgggggctagctggagagattgccggggtgaa04/14/0404/28/04123Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs17183529|allelePos=256|totalLen=511|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=123
 GAGAAAAACA AGAAGGGCGG TATTTTTAGG GCCATTAATT CTGACCACGT GCCTGAGAGG
 CAAGGTGGAT GGCCCTGGGA CAGAAACTGT TCATCACTAT GTCCCGGGGA GCAGGACGTC
 TGCAGGGCAC GCTGTGGGCT CTCGTCTTCC TAGGCATCCT AGTGGGCATG GTGGTGCCCT
 CGCCTGCAGG CACCCGTGCC AACAACACGC TGCTGGACTC GAGGGGCTGG GGCACCCTGC
 TGTCCAGGTC TCGCG
 Y
 GGGGCTAGCT GGAGAGATTG CCGGGGTGAA CTGGGAAAGT GGCTATTTGG TGGGGATCAA
 GCGGCAGCGG AGGCTCTACT GCAACGTGGG CATCGGCTTT CACCTCCAGG TGCTCCCCGA
 CGGCCGGATC AGCGGGACCC ACGAGGAGAA CCCCTACAGT GAGTGCCAGC TGCAGCCAGT
 CGGGACGCTT GGGGGTTTGG GCTCATGCAG GGCTAAAAGG TGAAGGGGCC CTGCTCTAGC
 GGACAGGATG CACGA

  GeneView back to top

GeneView via analysis of contig annotation:  

View more variation on this gene (click to hide).
Include clinically associated: in gene region cSNP has frequency double hit
Assembly SNP to Chr Chr Chr position Contig Contig position Allele
Function mRNA Protein
mRNA to Chr Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function Chr mRNA Protein
SNP to mRNA Accession Position Allele change Accession Position Residue change
on assembly: is labeled at position on chromosome .

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Integrated Maps: back to top
Genome Build Chr Chr Pos Contig Contig Pos SNP to
Chr		 Contig
allele		 Group term Group label Contig label Neighbor
SNP		 Map Method
doesn't map to any assembly.

  NCBI Resource Links back to top
Resource
Submitter-Referenced
GenBank
AY581424
dbSNP Blast Analysis
UniGene Cluster ID
166015

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss# Population Individual
Group		 Chrom.
Sample Cnt.
 Source C/C
 C/T
 HWP C
 T
ss23134700 PDR90 Global 172 IG 0.977 0.023 1.000 0.988 0.012

Summary Average
Het.+/- std err:		 Individual
Count		 Founders
Count		 Individual
Overlap		 Genotype
Conflict
0.023+/-0.105 90 90 0 0

  Validation Summary: back to top
Validation status Marker displays
Mendelian segregation		 PCR results confirmed
in multiple reactions		 Homozygotes detected
in individual genotype data
byFreq UNKNOWN UNKNOWN YES

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Revised: May 25, 2006 1:38 PM .