Reference SNP(refSNP) Cluster Report: rs16864310

Reference SNP(refSNP) Cluster Report: rs16864310

RefSNP
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	123/130
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_002021.1:c.668G>A
NP_002012.1:p.Arg223Gln
NT_004487.18:g.21740320G>A

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss32479800 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs16864310 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss23865803	PERLEGEN\|afd0660319	fwd/T	A/G	gcaccaccggagggggatgggtgatcagcc	aatctttgactcgggctacccatgggacat	08/10/04	08/20/04	123	Genomic	unknown
ss32479800	EGP_SNPS\|FMO1-032451	fwd/T	A/G	gcaccaccggagggggatgggtgatcagcc	aatctttgactcgggctacccatgggacat	01/07/05	02/08/05	125	Genomic	unknown
ss74902811	ILLUMINA\|ILMN_Human_1M_rs16864310	fwd/T	A/G	gcaccaccggagggggatgggtgatcagcc	aatctttgactcgggctacccatgggacat	08/28/07	08/29/07	129	Genomic	unknown
ss84156299	PHARMGKB_AB_DME\|PS206228_PA149749196_301	fwd/T	A/G	gcaccaccggagggggatgggtgatcagcc	aatctttgactcgggctacccatgggacat	12/06/07	12/10/07	130	Genomic	unknown

Fasta sequence (Legend)

 GGCATTTTAA TACTCTAGAT GCTCTGAATC CTAATCTCAA AAGGATTAAC TTTAAAATAG
 AAGTTAGAAG AACCAAGACT ATCTTGTCAG GGGTGTATTT TGAGAGTGGC AGACTTTTCA
 GTGCCTTTCC ATTCATGACA CTTCTTGAAT CTCTGGCAGA ACCAGCCAGC CGTGTTCACA
 GTGTCAAATG AAGGGATGTC TTTGATTGCT TCCAGGTGTT CCTCAGCACC ACCGGAGGGG
 GATGGGTGAT CAGCC
 R
 AATCTTTGAC TCGGGCTACC CATGGGACAT GGTGTTCATG ACACGCTTTC AGAACATGTT
 GAGAAATTCC CTCCCAACCC CAATTGTGAC TTGGTTGATG GAGCGAAAGA TAAACAACTG
 GCTCAATCAT GCAAATTACG GCTTAATACC AGAAGACAGG TAAATATAAT GTGACTGCCA
 AGGGCTTTTA GGAAGAAGGA GCCTCTGCCT GTCCAGCAGC CTATACAAGC CAGGCAGTAC
 CACAGCAACA TGGCT

GeneView

GeneView via analysis of contig annotation:

View more variation on this gene (click to hide).

Assembly	SNP to Chr	Chr	Chr position	Contig	Contig position	Allele

Function	mRNA				Protein
Function	mRNA to Chr	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via analysis of contig annotation: N/A.

GeneView via direct blast against RefSeq sequences (used when no gene model is available):

Function	Chr	mRNA				Protein
Function	Chr	SNP to mRNA	Accession	Position	Allele change	Accession	Position	Residue change

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A

Integrated Maps:

Genome Build	Chr	Chr Pos	Contig	Contig Pos	SNP to Chr	Contig allele	Group term	Group label	Contig label	Neighbor SNP	Map Method

doesn't map to any assembly.

NCBI Resource Links

Resource

Submitter-Referenced
GenBank
NC_000001.5

dbSNP Blast Analysis

UniGene Cluster ID
1424

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/G	G/G	HWP	A	G
ss23865803	AFD_EUR_PANEL	European	48	IG		1.000			1.000

	AFD_AFR_PANEL	African American	46	IG		1.000			1.000

	AFD_CHN_PANEL	Asian	48	IG	0.042	0.958	1.000	0.021	0.979

ss32479800	PDR90	Global	176	IG	0.011	0.989	1.000	0.006	0.994

	HapMap-CEU	European	120	IG		1.000			1.000

	HapMap-HCB	Asian	90	IG		1.000			1.000

	HapMap-JPT	Asian	90	IG		1.000			1.000

	HapMap-YRI	Sub-Saharan African	120	IG		1.000			1.000

ss84156299	PA149749197		358	AF				0.003	0.997

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.005+/-0.052	1011	862	15	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	YES

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .